View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_high_8 (Length: 418)
Name: NF20270_high_8
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 3361640 - 3361237
Alignment:
| Q |
15 |
cataggactgactaattcgaggagataaatcccaccgtgtatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgcc |
114 |
Q |
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| T |
3361640 |
cataggactgactaattcgaggagacaaattcaaccgtctatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgcc |
3361541 |
T |
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| Q |
115 |
ttgaatgtggaatcatgtgttcaagttttgagaattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaatg |
214 |
Q |
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| T |
3361540 |
ttgaatgtggaatcatgtgttcaagttttgagaattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaatg |
3361441 |
T |
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| Q |
215 |
atttggcctgtactgagcatgaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcagtcaccactttaaagag |
314 |
Q |
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| T |
3361440 |
atttggcctgtattgagcatgaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcggtcaccactttaaagag |
3361341 |
T |
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| Q |
315 |
tgatcataccgattatgtagcgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggctttacttgaagatcataggcaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3361340 |
tgatcataccgattatgtagcgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggctttacttgaagatcatcggcaa |
3361241 |
T |
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| Q |
415 |
gatt |
418 |
Q |
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| T |
3361240 |
gatt |
3361237 |
T |
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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 392
Target Start/End: Complemental strand, 35907688 - 35907360
Alignment:
| Q |
64 |
atttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatgtggaatcatgtgttcaagttttgagaattttgaacaccaagg |
163 |
Q |
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|||||||| |||||| ||||||||||||||||||| || || ||| ||||| | ||| | | | |||||||| ||||||||| | ||| |||||| | |
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| T |
35907688 |
atttactggagctttttgttgagttttgcagatgatatggaggaagatgccaaggatgagaagtgctgtgttcaggttttgagatgtatgatcaccaatg |
35907589 |
T |
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| Q |
164 |
cagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaatgatttggcctgtactgagcatgaaaactggcctgaaatttgttgtagtgc |
263 |
Q |
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| T |
35907588 |
cagataatgagattgagcaattggaaatgaatctcgcgtcccttcagaatgaattggcctggactgaaaatgaaaactggcctgaaatatgctgcaatgg |
35907489 |
T |
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| Q |
264 |
tttgaccaaaagaatcgaccaacttgacgctgcagtcaccactttaaagagtgatcataccgattatgtagcgatgcaggtcctattgcatagtaaacct |
363 |
Q |
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| T |
35907488 |
tttgacagaaaaaatcaaccagcttgatgttgcggttaacactttgaagagtggtcatgctgatgatgcagaggtgcagctactattggatagtggacca |
35907389 |
T |
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| Q |
364 |
gctgagacacttcatgaaataatgaaggc |
392 |
Q |
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| T |
35907388 |
gctgagagacttcatgaaatagtgaaggc |
35907360 |
T |
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