View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_11 (Length: 355)
Name: NF20270_low_11
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 2892880 - 2893208
Alignment:
| Q |
11 |
atgaaatttcatgagataaaacataagacacaactaagcttcaactaaatggccttctctttcccttttgatacttgcagttcatatgaaataaaatgta |
110 |
Q |
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| T |
2892880 |
atgaaatttcatgagataaaacataagacacaactaagcttcaagtaaatggccttctccttcccttttgatacttgcagttcatatgaaataaaacgta |
2892979 |
T |
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| Q |
111 |
aaactattgggataaaattacatctcagtaaattccttactaaaacccaaaacagtctaattcctgactaactacattgtagtcttcactaacacaatta |
210 |
Q |
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| T |
2892980 |
aaactattgggataaaattacatctcagtaaattccttactaaaacccaaatcagtctaattcctgactaactacattgtagtcttcactaacacaatta |
2893079 |
T |
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| Q |
211 |
atcaatatgtattcaagtgatatatgaaaattgtaaatgtgtatcatagaatatataatcttgtcaattttaactacggataccctaagagcgaataatc |
310 |
Q |
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| T |
2893080 |
atcaatatgtattcaagtgatatatgaaaattgtaaatgtgtatcatagaatatataatcttgtcaattttaactccggataccctaagagcgaataatc |
2893179 |
T |
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| Q |
311 |
acagggtccccgccaaccgggtggaatca |
339 |
Q |
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| T |
2893180 |
acagggtccccgccaaccgggtggaatca |
2893208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 3157761 - 3157678
Alignment:
| Q |
113 |
actattgggataaaattacatctcagtaaattccttactaaaacccaaaacagtctaattcctgactaactacattgtagtctt |
196 |
Q |
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| T |
3157761 |
actattcggataaaattacatctcagtaaatttcttactaaaacccaaaacagtctaattcatgactaactacattgtagtctt |
3157678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 3157008 - 3156943
Alignment:
| Q |
191 |
agtcttcactaacacaattaatcaatatgtattcaagtgat---atatgaaaattgtaaatgtgta |
253 |
Q |
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| T |
3157008 |
agtcttcactaacacaatgaatcaatatgtattcaagtgatatgatatgaaaataataaatgtgta |
3156943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 3157326 - 3157261
Alignment:
| Q |
191 |
agtcttcactaacacaattaatcaatatgtattcaagtgat---atatgaaaattgtaaatgtgtat |
254 |
Q |
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| T |
3157326 |
agtcttcactaatacaatgaatcaa-atgtattcaagtgatatgatatgaaaataataaatgtgtat |
3157261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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