View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_13 (Length: 341)
Name: NF20270_low_13
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 54181058 - 54181374
Alignment:
| Q |
1 |
actatgggtgcatatgtggctccaatattggtaacattgttttgattagtagtagtggtacaacaaatagtttcatcaagatgggaagaaaaatttgagg |
100 |
Q |
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| T |
54181058 |
actatgggtgcatatgtggctccaatattggtaacattgttttgattagtagtagtggtacaacaaatagtttcatcaaaatgggaagaaaaatttgagg |
54181157 |
T |
|
| Q |
101 |
gtgtagtagctatttcttcaaaacgctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataagaataatttagaaa |
200 |
Q |
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| T |
54181158 |
gtgtagtagctatttcttcaaaacgctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataagaataatttagaaa |
54181257 |
T |
|
| Q |
201 |
aagtaatgacacacaaacaatagagaatgtgattagaaacacaaaccggatttgaaacaagtacttcctcaacattgacatgtccatcttctttttgcct |
300 |
Q |
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| T |
54181258 |
aagtaatgacacacaaacaatagagaatgtgattagaaacacaaaccggatttgaaacaagtacttcctcaacattgacatgtccatcttcttttttcct |
54181357 |
T |
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| Q |
301 |
attcagattgaaaattg |
317 |
Q |
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| T |
54181358 |
attcagattgaaaattg |
54181374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 1210362 - 1210210
Alignment:
| Q |
125 |
gctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataagaataatttagaaaaagtaatgacacacaaacaataga |
224 |
Q |
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| T |
1210362 |
gctttgcattgttcatgttaggaagtaagaatgccattccactattattgctagccaaataataattagctagagaaagtagtgagacacaaaaaataga |
1210263 |
T |
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| Q |
225 |
gaatgtgattagaaacacaaaccggatttgaaacaagtacttcctcaacattg |
277 |
Q |
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| T |
1210262 |
ggatgcaatgagaaacataaaccagaattgaaccaagtacttcctcaacattg |
1210210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 292
Target Start/End: Complemental strand, 41947608 - 41947446
Alignment:
| Q |
125 |
gctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataagaataatttagaaaaagtaatgacacacaaacaataga |
224 |
Q |
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|||||||||| |||||||||| || ||||||||| ||| |||||| |||||||||||||| |||||| |||| |||||| ||| ||||||| |||||| |
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| T |
41947608 |
gctttgcattgttcatgttagaaagtaagaatgtcattccactattattgctagccaaat---aataatctagagaaagtagtgagacacaaaaaataga |
41947512 |
T |
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| Q |
225 |
gaatgtgattagaaacacaaaccggatttgaaacaagtacttcctcaacattgacatgtccatcttct |
292 |
Q |
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| T |
41947511 |
ggctgtaatgagaa--acagaccagaattgaaccaaatacttcctcaacattggcatgtccatcttct |
41947446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 41941962 - 41941858
Alignment:
| Q |
188 |
aataatttagaaaaagtaatgacacacaaacaatagagaatgtgattagaaacacaaaccggatttgaaacaagtacttcctcaacattgacatgtccat |
287 |
Q |
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|||||| ||||||||||| || ||| ||| ||||||| |||||| ||||||||| |||||| ||||| ||| |||||| ||||||||| |||| |||| |
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| T |
41941962 |
aataatctagaaaaagtagagagacaaaaaaaatagaggctgtgatgagaaacacataccggaattgaaccaaatacttcatcaacattggcatgcccat |
41941863 |
T |
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| Q |
288 |
cttct |
292 |
Q |
| |
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||||| |
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| T |
41941862 |
cttct |
41941858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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