View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_14 (Length: 340)
Name: NF20270_low_14
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 47727118 - 47726909
Alignment:
| Q |
2 |
gagatgaaagttttcaaatcttcattaatatgccctttgatctttctagtgctcttcctcaattttttccttgttattttcactccaaatgaaaatcata |
101 |
Q |
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| T |
47727118 |
gagatgaaagttttcaaatcttcattaatatgccctttgatctttctagtgctcttcctcaattttttccttgttattttcactccaaatgaaaatcata |
47727019 |
T |
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| Q |
102 |
tgatccatatcaactcacctcatgagcttctatcgatctcatcaaataatgttagctacaataatataagtcaaacatgga-taaggtgctctcattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
47727018 |
tgatccatatcaactcacctcatgagcttctctcgatctcatcaaataatgttagctacaataatataagttaaacatggattaaggtgctctcattgtt |
47726919 |
T |
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| Q |
201 |
ctcacatgtc |
210 |
Q |
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|||||||||| |
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| T |
47726918 |
ctcacatgtc |
47726909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 47726885 - 47726796
Alignment:
| Q |
235 |
cagtttggtgatgggagaaagaacatgaccagtttggagaggattgaagaagaattagcacaaacaagagcattgattcagagagcaatt |
324 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47726885 |
cagtttggtgatgggagaaagaacatgactagtttggagaagattgaagaagatttagcacaaacaagagcattgattcagagagcaatt |
47726796 |
T |
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