View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_15 (Length: 335)
Name: NF20270_low_15
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 32366113 - 32366415
Alignment:
| Q |
16 |
gcacagactgtgaaatctggtccttttcaataacaagttccttgaatttggcagatgcagaaccgaatttgagaaactctctttgaggattttcattgct |
115 |
Q |
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| T |
32366113 |
gcacagactgtgaaatttggtccttttcaataacaagttccttgaatttggcagatgcagaaccgaatttgagaaactctctttgaggattttcattgct |
32366212 |
T |
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| Q |
116 |
cggaaatgtttgtgtaggagttgaaatatctacagaagcaaactccttcacttgactccctttagattcttcaatttcatcttggtgatttgtgatacca |
215 |
Q |
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| T |
32366213 |
cggaaatgtttgtgtaggagttgaaatatctacagaagcaaactccttcacttgactccctttagattcttcaatttcatcttggtgatttgtgatacca |
32366312 |
T |
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| Q |
216 |
ttttcaactgaaatcattctgatacttaactttgagctttcacaatcagaatcagaactataccactaatggtatagttatagaaggattgctgcaaaga |
315 |
Q |
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| T |
32366313 |
ttttcaactgaaatcattctgatacttaactttgagctttcacaatcagaatctgaactataccactaatggtatagttatagaaggattactgcaaaga |
32366412 |
T |
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| Q |
316 |
tat |
318 |
Q |
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||| |
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| T |
32366413 |
tat |
32366415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 32377798 - 32378072
Alignment:
| Q |
16 |
gcacagactgtgaaatctggtccttttcaataacaagttccttgaatttggcagatgcagaaccgaatttgagaaactctctttgaggattttcattgct |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
32377798 |
gcacagactgtgaaatctggtctttttcaataacaagctcattgactttggcagatgcagaaccaattttgagaaactttctttgaggattttcattgct |
32377897 |
T |
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| Q |
116 |
cggaaatgtttgtgtaggagttgaaatatctacagaagcaaactccttcacttgactccctttagattcttcaatttcatcttggtgatttgtgatacca |
215 |
Q |
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|||||||||| || || ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
32377898 |
tggaaatgtttttggagtggttgaaatatctatagaagcaaattccttcacttgactcccattagattcttcaatttcatcttggtgatttacaatacca |
32377997 |
T |
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| Q |
216 |
ttttcaactgaaatcattctgatacttaactttgagctttcacaatcagaatcagaactataccactaatggtat |
290 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
32377998 |
ttttcaactgaaatcattctgatactgaactttgagctttcacaataagaatcagaaccataccactaacggtat |
32378072 |
T |
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