View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_16 (Length: 314)
Name: NF20270_low_16
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 31399250 - 31399541
Alignment:
| Q |
10 |
aaaaatatctcaaaagtagggatgacatttataaccgtgcatttgtacatagcagcgaagccataaattttaaatagtggaggcaggcatcatat--ata |
107 |
Q |
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| T |
31399250 |
aaaaatatctcaaaagtagggacgacatttaaaaccgtgcatttgtacatagcagcgaagccataaattttaaatagtggaggcaggcattatatatata |
31399349 |
T |
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| Q |
108 |
atttgtagcattacatatattaaatagaggacataatcatatattgaattttatatgattgaattaaagacatatattaccccgacgtactctaaatttt |
207 |
Q |
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| T |
31399350 |
atttgtagcattacatatattaaatagaggacataatcatatattgaattttatatgattgaattaaagacatatattaccccgacgtactctaaatttt |
31399449 |
T |
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| Q |
208 |
taactttgaatagaaatgtttaactaactcaaatttgaatatctcattcttatctatctatttattaaagtaaccttaaaaatgaacatatt |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
31399450 |
taactttgaatagaaatgttaaactaactcaaatttgaatatctcattcttatgtagctatttattaaagtaaccttaaaaatgaacatatt |
31399541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 23525723 - 23525753
Alignment:
| Q |
10 |
aaaaatatctcaaaagtagggatgacattta |
40 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23525723 |
aaaaatatctcaaaagtagggatgacattta |
23525753 |
T |
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