View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_18 (Length: 302)
Name: NF20270_low_18
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 8136245 - 8135963
Alignment:
| Q |
1 |
attgtacatacccaatattctctgttactttttacttcacggttgaaggttaactttgtcattttatcatattttcggtgccaatttacataactaccca |
100 |
Q |
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| T |
8136245 |
attgtacatacccaatattctccgtgactttttacttcacaatt-aaggttagctttgtcattttatcatattttcgttaccaatttacataactaccca |
8136147 |
T |
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| Q |
101 |
gcttctagnnnnnnnnnncctggtgtttcttttaacactattaagaatattatggtcgtttgcactcattagtttacatgatcaaaaacaactttgtatt |
200 |
Q |
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| T |
8136146 |
gcttctagtttttttt--cctggtgttt-ttttaacattattaaggatattatgatcgtttgcactcattaattcacatgatcaaaaacaactttgtatt |
8136050 |
T |
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| Q |
201 |
tactttatgcaaaaatagtgacaacaactttttactttatatccaaccattttttctttatattgtcatttcattatgtccaacaattc |
289 |
Q |
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| T |
8136049 |
tactttctgcaaa--tagacacaacaactttttactttatatccaatcattttttctttatattgtcatttcattatgtccaacaattc |
8135963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 29 - 289
Target Start/End: Complemental strand, 8135884 - 8135626
Alignment:
| Q |
29 |
tttttacttcacggttgaaggttaactttgtcattttatcatattttcggtgccaattt-acataactacccagcttctagnnnnnnnnnncctggtgtt |
127 |
Q |
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| T |
8135884 |
tttttacttcacagttgaaggttaactttgtcattttatcatattttcggtgccaattttacataactacccagctttt--gctttttgttcttgctatt |
8135787 |
T |
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| Q |
128 |
tcttttaacactattaagaatattatggtcgtttgcactcattagtttacatgatcaaaaacaactttgtatttactttatgcaaaaatagtgacaacaa |
227 |
Q |
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| T |
8135786 |
t-tcttaacactattaaggatattatggttatttgcactcattagttcatattatcaaaaacaactttgtatttactttcatcaaaaacaaacacaagaa |
8135688 |
T |
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| Q |
228 |
ctttttactttatatccaaccattttttctttatattgtcatttcattatgtccaacaattc |
289 |
Q |
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| T |
8135687 |
ctttttactctatatccaaccatgttttctttatattgtcacttcattctgtccaacaattc |
8135626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 289
Target Start/End: Complemental strand, 8136534 - 8136291
Alignment:
| Q |
43 |
ttgaaggttaactttgtcattttatcatattttcggtgccaattt-acataactacccagcttctagnnnnnnnnnncctggtgtttcttttaacactat |
141 |
Q |
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| T |
8136534 |
ttgaaggttaactttgttattttatcatattttcggtgccaattttacataactaccgagcttgt--gttttttgttcatgttgttt-ttttaacactat |
8136438 |
T |
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| Q |
142 |
taagaatattatggtcgtttgcactcattagtttacatgatcaaaaacaactttgtatttactttatgcaaaaatagtgacaacaactttttactttata |
241 |
Q |
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| T |
8136437 |
taaggatattatggtcatttgcactcattggtgcacattatcaaaaacaactttatatttactttctgcaaaacaaac-acaacagcttttcactttata |
8136339 |
T |
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| Q |
242 |
tccaaccattttttctttatattgtcatttcattatgtccaacaattc |
289 |
Q |
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| T |
8136338 |
tcaaaccaagttttctttatattatcacttcgttctgtccaacaattc |
8136291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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