View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_19 (Length: 288)
Name: NF20270_low_19
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 40291509 - 40291248
Alignment:
| Q |
19 |
caatcatttccttaaaactccccattatgagtattcaaactcggatggtaccattgctatttctaaaaactgaaatgcattagagttacaacatatgaaa |
118 |
Q |
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| T |
40291509 |
caatcatttccttaaaactccccattatgagtattcaaactcggatggtaccattgctatttctaaaaactgaaatgcattagagttacaacatatgaaa |
40291410 |
T |
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| Q |
119 |
atgatattattattatagacgttttggttcaaaagaaagactgcattctatttacattttatcaactgtggttaataatactaatcatttgctgtttcaa |
218 |
Q |
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| T |
40291409 |
attatattattattatagacgttttggttcaaaagaaagactgcattctatttacattttatcaactgtggttaataatactaatcatttgctgtttcaa |
40291310 |
T |
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| Q |
219 |
acccccttcttttacaagaataatttttaaattgtatgatcaggcctctaaagatgatgatg |
280 |
Q |
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| T |
40291309 |
acccccttcttttacaataataattttaaaattgtatgatcaggcctctaaagatgatgatg |
40291248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 40283832 - 40283782
Alignment:
| Q |
228 |
ttttacaagaataatttttaaattgtatgatcaggcctctaaagatgatga |
278 |
Q |
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| T |
40283832 |
ttttacaagaattattttttaactgtatgatcaggcctctaaagatgatga |
40283782 |
T |
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