View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_2 (Length: 536)
Name: NF20270_low_2
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 229 - 438
Target Start/End: Original strand, 6921170 - 6921378
Alignment:
| Q |
229 |
tctttcaaactcacctaagcttttcccctttttctttcaaatttatgatggctgcatcttcattttcatattctccatcttcaaaactatgtttgatctt |
328 |
Q |
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| T |
6921170 |
tctttcaaactcaccta-gcttttcccctttttctctcaaatttatgatggctgcatcttcattttcatattctccatcttcaaaactatgtttgatctt |
6921268 |
T |
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| Q |
329 |
ccccctcttcctttacacaacccaacaaaccctccctttctataaactcatttgaatcctcaaatcccaaccccatctcagctcaatctttgagttccct |
428 |
Q |
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| T |
6921269 |
ccccctcttcctttacacaacccaacaaaccctccctttctataaactcatttgaatcctcaaatcccaaccccatctcagctcaatctttgagttcccc |
6921368 |
T |
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| Q |
429 |
catatatatc |
438 |
Q |
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|||||||||| |
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| T |
6921369 |
catatatatc |
6921378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 6920961 - 6921057
Alignment:
| Q |
94 |
agtactcattttgatatctaaacttaagaggtattacaaaggaatgagtgaatgacacttccataagaaaatattaaatattcattaaaatatgtag |
190 |
Q |
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| T |
6920961 |
agtactcattttgatatctaaaattaagaggtattacaaaggaatgagtaaatggcacttccatgaaaaaatattaaaaattcattaaaatatgtag |
6921057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 6920417 - 6920461
Alignment:
| Q |
25 |
tgtgtgtaagattttttgtttgattaatgatgatgcttttttaat |
69 |
Q |
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| T |
6920417 |
tgtgtgtaagattttttgtttgattaatgatgatgtttttttaat |
6920461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 441 - 530
Target Start/End: Original strand, 43616513 - 43616603
Alignment:
| Q |
441 |
atatccacacaaa-ccatattttcaaatcacttctttttcacccaccaactatttgtctatttgtttctaaaactttctccattcatctca |
530 |
Q |
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| T |
43616513 |
atatccacacaaatccatatttttagatcacatggttttcacccaccaactatttatctttttgtttctaaaactttctccactcatctca |
43616603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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