View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20270_low_20 (Length: 277)

Name: NF20270_low_20
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20270_low_20
NF20270_low_20
[»] chr5 (3 HSPs)
chr5 (9-260)||(42261418-42261669)
chr5 (99-148)||(42777155-42777204)
chr5 (126-190)||(37512020-37512084)
[»] chr4 (1 HSPs)
chr4 (119-245)||(42448872-42448998)
[»] chr2 (2 HSPs)
chr2 (101-188)||(29353303-29353390)
chr2 (112-185)||(44919370-44919443)
[»] chr1 (3 HSPs)
chr1 (80-139)||(40399710-40399769)
chr1 (92-190)||(367933-368031)
chr1 (101-188)||(51869132-51869219)
[»] chr8 (2 HSPs)
chr8 (110-176)||(31135859-31135925)
chr8 (111-188)||(4027038-4027115)
[»] chr7 (3 HSPs)
chr7 (111-188)||(30249009-30249086)
chr7 (119-212)||(5441502-5441595)
chr7 (119-212)||(5450512-5450605)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 42261669 - 42261418
Alignment:
Q  9 gataatacttaaaaggcagtttatgtaagatgagaaatgtatcatcataatcagaatgatcattacataaaatattgttgcagtacatcttaatgaaatt 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261669 gataataattaaaaggcagtttatgtaagatgagaaatgtatcatcataatcagaatgatcattacataaaatattgttgcagtacatcttaatgaaatt 42261570  T
Q  109 ggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261569 ggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatga 42261470  T
Q  209 ggtaaattgatccaaaccttttcgtcaatgacagcaatagccagtgaattgt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261469 ggtaaattgatccaaaccttttcgtcaatgacagcaatagccagtgaattgt 42261418  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 42777204 - 42777155
Alignment:
Q  99 taatgaaattggggttttcgaataagagagaccatgatttgcatacacat 148  Q
    |||||||||| ||||| || ||||||||||||||||||||||| ||||||    
T  42777204 taatgaaattagggttatcaaataagagagaccatgatttgcacacacat 42777155  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 37512084 - 37512020
Alignment:
Q  126 gagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatg 190  Q
    |||||||||||||||||||| ||  ||| || ||||| ||||| | |||||||||||| ||||||    
T  37512084 gagaccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatg 37512020  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 42448998 - 42448872
Alignment:
Q  119 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggtaaattga 218  Q
    |||||||||||||||  ||||||||| |||  ||| | ||||||||||||||| || ||||||||||||||||||||||| | |||||||||||||| |     
T  42448998 aataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaatgaagagcactatatcatgaggtaaatagt 42448899  T
Q  219 tccaaaccttttcgtcaatgacagcaa 245  Q
    | ||||||||||||| | |||||||||    
T  42448898 tgcaaaccttttcgttagtgacagcaa 42448872  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 29353303 - 29353390
Alignment:
Q  101 atgaaattggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 188  Q
    |||||||| |||||||| |||||||||||||||| |||   ||| |||  ||| |||||||| ||||||||||| |||||||||||||    
T  29353303 atgaaattagggttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattttaaaggaagttttgacaaaa 29353390  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 44919370 - 44919443
Alignment:
Q  112 gttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgaca 185  Q
    |||||| |||||||||| ||||||||| | |||||||  |||  |||| || ||||||||||| ||||||||||    
T  44919370 gttttcaaataagagagcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgaca 44919443  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 40399710 - 40399769
Alignment:
Q  80 atattgttgcagtacatcttaatgaaattggggttttcgaataagagagaccatgatttg 139  Q
    |||||||||| |||||| || |||||||| |||||||||||||| |||| ||||||||||    
T  40399710 atattgttgcggtacatgttcatgaaattagggttttcgaataaaagagtccatgatttg 40399769  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 368031 - 367933
Alignment:
Q  92 tacatcttaatgaaattggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatg 190  Q
    ||||| || |||||||| ||||| || ||||||||   ||||||||||| ||||||| |||| ||  |||| ||||||| |||||||||||||| ||||    
T  368031 tacatgttcatgaaattagggttatcaaataagagtacccatgatttgcgtacacatttaaatcgagtcaaagattttagaggcagttttgacataatg 367933  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 51869219 - 51869132
Alignment:
Q  101 atgaaattggggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 188  Q
    |||||||  |||| ||| |||||||||||||||| |||| || |||||  ||| || ||||| |||||||| || |||||||||||||    
T  51869219 atgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattttaacggaagttttgacaaaa 51869132  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 31135859 - 31135925
Alignment:
Q  110 gggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggca 176  Q
    |||||||| ||||| |||||||||| |||||||||||||  ||| ||||||||  ||||||||||||    
T  31135859 gggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggca 31135925  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 4027115 - 4027038
Alignment:
Q  111 ggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 188  Q
    ||||||| |||||||||||||||| ||||  |||||||  ||| || ||||| ||||||||||| ||||| |||||||    
T  4027115 ggttttcaaataagagagaccatggtttgtgtacacatccaaaacgtttcaaagattttaaaggaagtttcgacaaaa 4027038  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 30249086 - 30249009
Alignment:
Q  111 ggttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaa 188  Q
    ||||||| |||||||||||||||| ||||  | |||||  ||| ||||| || ||||||||||| |||||||||||||    
T  30249086 ggttttcaaataagagagaccatgttttgtgtgcacattcaaaacgctttaaagattttaaaggaagttttgacaaaa 30249009  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 5441595 - 5441502
Alignment:
Q  119 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggta 212  Q
    ||||||| |||||| ||||||| ||| |||  ||| || ||||||||||| | ||||| ||||||||||||  |||  |||||||||| |||||    
T  5441595 aataagatagaccacgatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggta 5441502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 5450605 - 5450512
Alignment:
Q  119 aataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggta 212  Q
    ||||||| |||||| ||||||| ||| |||  ||| || ||||||||||| | ||||| ||||||||||||  |||  |||||||||| |||||    
T  5450605 aataagatagaccacgatttgcgtacgcatccaaaacgattcaatgatttcacaggcaattttgacaaaatagagaagacaagatcattaggta 5450512  T

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