View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20270_low_26 (Length: 253)

Name: NF20270_low_26
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20270_low_26
NF20270_low_26
[»] chr6 (2 HSPs)
chr6 (17-145)||(32870692-32870820)
chr6 (18-105)||(32903959-32904046)
[»] chr5 (1 HSPs)
chr5 (148-246)||(14911567-14911664)
[»] chr7 (1 HSPs)
chr7 (144-234)||(42434013-42434098)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 32870692 - 32870820
Alignment:
Q  17 agcatgtgctgcagcttgcacgcgccagtcatcagtgcatcgaccaaagatgagccaggtaatgtgaagaatttgttttatcgtttaccccacctgttca 116  Q
    |||||| ||||||||||||||||| |||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  32870692 agcatgcgctgcagcttgcacgcgtcagtcagcaaaggatcgaccaaagatgagccaggtaatgtgaagaatttgttttatcgtttaccctacctgttta 32870791  T
Q  117 ttttcaaccgtcgttcctcttttcaaaaa 145  Q
    |||||||| ||| ||| ||||||||||||    
T  32870792 ttttcaactgtcattcttcttttcaaaaa 32870820  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 32903959 - 32904046
Alignment:
Q  18 gcatgtgctgcagcttgcacgcgccagtcatcagtgcatcgaccaaagatgagccaggtaatgtgaagaatttgttttatcgtttacc 105  Q
    ||||| |||||||||||||| || || ||| ||  || ||||||||||||||||||||||| ||||||| |||||| |||| ||||||    
T  32903959 gcatgcgctgcagcttgcacacgtcactcagcaaagcgtcgaccaaagatgagccaggtaaagtgaagagtttgttatatcatttacc 32904046  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 14911567 - 14911664
Alignment:
Q  148 aaaatgctcaattgcacgactaaaaccatcgtgtgtatcccgcgaatgtgctggcaactgaggtccccactctttttcatacaaaatgctgaaattaac 246  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||  |||||||||    
T  14911567 aaaatgctcaattgcacgacaaaaatcatcgtgtgtatcccgcgaatgcgttggcaactgaggtcctcactc-ttttcatacaaaatgtcgaaattaac 14911664  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 42434013 - 42434098
Alignment:
Q  144 aaggaaaatgctcaattgcacgactaaaaccatcgtgtgtatcccgcgaatgtgctggcaactgaggtccccactctttttcatacaaaat 234  Q
    |||| |||||||||||||  |||| |||||||||||| ||     ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  42434013 aagggaaatgctcaattgtgcgacaaaaaccatcgtgcgt-----gcgaatgcgctggcaactgaggtccccactctttttcatgcaaaat 42434098  T

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