View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20270_low_3 (Length: 506)
Name: NF20270_low_3
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 7262174 - 7262570
Alignment:
| Q |
11 |
cataggtgataagtcataactcataagcatagtttgtagctttatcaaggatcttgatcttattccctttttatgggtaaaggaagaagnnnnnnnccag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7262174 |
cataggtgataagtcataactcataagcatagtttgtagctttatcaaggatcttgatcttattccctttttatgggtaaaggaagaagaaaaaaaccag |
7262273 |
T |
|
| Q |
111 |
aatcagaattgagacgaatttgagagcaatcatatagtataggacaggtagaaaggtaagaaattgaagaagggttttgaattttaccaaagatatcaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7262274 |
aatcagaattgagacgaatttgagagcaatcatatagtataggacaagtagaaaggtaagaaattgaagaagggttttgaattttaccaaagatatcaga |
7262373 |
T |
|
| Q |
211 |
aattaggatgagtgccaatttggaattagaaggtccagtgacataggattgaagtcctccaagttcaaggactgttccaactccatggatacctgagttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7262374 |
aattaggatgagtgccaatttggaattagaaggtccagtgacataggattgaagtcctccaagttcaaggactgttccaactccatggatacctgagttc |
7262473 |
T |
|
| Q |
311 |
aggttaggtggattttcaagacaatgagaacttgacatgcctaattagatatcatagatgaattgatgcaagagttgacggaaatgttaccaaatat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7262474 |
aggttaggtggattttcaagacaatgagaacttgacatgcctaattagatataatagatgaattgatgcaagagttgacggaaatgttaccaaatat |
7262570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 7262558 - 7262624
Alignment:
| Q |
424 |
tgttaccagatatgttttccattagaaaaataatagcgtcttccattagaaaaataaacataagaac |
490 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7262558 |
tgttaccaaatatgttttcaattagaaaaataatagcgtcttccattagaaaaataaacataagaac |
7262624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University