View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_6 (Length: 440)
Name: NF20270_low_6
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 50616814 - 50616514
Alignment:
| Q |
15 |
gttacaaaataattaggtgattaaagatagatacaagttgagtgatctctccctatccctaatttagcttttggtcagcagcatccaatgacggtcctcg |
114 |
Q |
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| T |
50616814 |
gttacaaaataattaggtgattaaagatagatacaagttgagtgatctc--cctatccctaatttagcttttggtcagcagcatccaatgacggtcctcg |
50616717 |
T |
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| Q |
115 |
tggagctctaggaggtttgttaccccattttttccatttctccttaacaatattgcttaacttcatcaaaggaagagttcaatttacttaagcagcacat |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50616716 |
tggagctctaggaggtttgttaccccattttttccgtttctccttaacaatattgcttaacttcatcaaaggaagagttcaatttacttaagtagcacat |
50616617 |
T |
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| Q |
215 |
agaatcccaagccgaagaactcacccataaaatgcatcaggtagaggaacgtacttgaggagaaagaaagagtggcaaatgaaatgtaagcttaatcatg |
314 |
Q |
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| T |
50616616 |
agaatcccaagccgaagaactcacccataaaatgcatcaggtagagga----acttgaggagaaagaaagagtggcaaatgaaatgtaagcttaatcatg |
50616521 |
T |
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| Q |
315 |
ttcgtta |
321 |
Q |
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||||||| |
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| T |
50616520 |
ttcgtta |
50616514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 50616190 - 50616093
Alignment:
| Q |
330 |
aactatataattcctcatagatgcatggcgttgtgagtgcttcccttactctataatatttagtttacttaatgacaggcttctctctgctcctcctc |
427 |
Q |
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| T |
50616190 |
aactatataattcctaatagatgcatggcgttgtgagtgcttcccttactctataatatttagtttacttaatgacatgcttctttgggctcctcctc |
50616093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 50611680 - 50611626
Alignment:
| Q |
78 |
ttagcttttggtcagcagcatccaatgacggtcctcgtggagctctaggaggttt |
132 |
Q |
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| T |
50611680 |
ttagcttttggtcagcagcatccaacgacggccctcgtggagctctaggaggttt |
50611626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 164 - 318
Target Start/End: Original strand, 12779114 - 12779264
Alignment:
| Q |
164 |
atattgcttaacttcatcaaaggaagagttcaatttacttaagcagcacatagaatcccaagccgaagaactcacccataaaatgcatcaggtagaggaa |
263 |
Q |
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| T |
12779114 |
atattgcttaactgcgtcaagggaagagttgagtttacttaagcaccacataaaatcccaagctaaataactcacccatagaatgcatcaggtagagga- |
12779212 |
T |
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| Q |
264 |
cgtacttgaggagaaagaaagagtggcaaatgaaatgtaagcttaatcatgttcg |
318 |
Q |
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| T |
12779213 |
---acttgaagagaaagaaagagtggaaaataaaatgtaagcttgatcatgttcg |
12779264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 5935186 - 5935258
Alignment:
| Q |
341 |
tcctcatagatgcatggcgttgtgagtgcttcccttactctataatatttagtttacttaatgacaggcttct |
413 |
Q |
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| T |
5935186 |
tcctcatggatgcatggcgttgtgcgtgcttcccttactctatgctcttcagtttacttactgacaagcttct |
5935258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 19908377 - 19908516
Alignment:
| Q |
167 |
ttgcttaacttcatcaaaggaagagttcaatttacttaagcagcacatagaatcccaagccgaagaactcacccataaaatgcatcaggtagaggaacgt |
266 |
Q |
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|||||||||| ||| || || |||||| | |||||||||||||||||||||| | || ||| |||||||| ||||| |||||| | ||| ||||| |
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| T |
19908377 |
ttgcttaactccattaagggcagagttgagtttacttaagcagcacatagaagctcaggccaaagaactcgaccatagaatgcaccgggtggagga---- |
19908472 |
T |
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| Q |
267 |
acttgaggagaaagaaagagtggcaaatg-aaatgtaagcttaa |
309 |
Q |
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| T |
19908473 |
acttgaagagaaggaaagagtggcaaatgaaaatgtaagcttaa |
19908516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 37331068 - 37331177
Alignment:
| Q |
200 |
acttaagcagcacatagaatcccaagccgaagaactcacccataaaatgcatcaggtagaggaacgtacttgaggagaaagaaagagtggcaaatg-aaa |
298 |
Q |
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||||||||||||||||||| |||| ||| |||||||| ||| | |||||| | ||| ||||| |||||| ||||| |||||||||||||||| ||| |
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| T |
37331068 |
acttaagcagcacatagaagcccaggccaaagaactcgaccacagaatgcaccgggtggagga----acttgaagagaaggaaagagtggcaaatgaaaa |
37331163 |
T |
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| Q |
299 |
tgtaagcttaatca |
312 |
Q |
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|||||||||||||| |
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| T |
37331164 |
tgtaagcttaatca |
37331177 |
T |
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