View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20270_low_7 (Length: 426)
Name: NF20270_low_7
Description: NF20270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20270_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 3360708 - 3361083
Alignment:
| Q |
19 |
tacaaagctagtaaacatgttttgaaatcattatgtaaacacatcaaataagcatatacatattaaacagacctaatatgccagacaacagaggtaataa |
118 |
Q |
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| T |
3360708 |
tacaaagctagtaaacatgttttgaaatcattatgtaaacacatcaaataagcatatacatattaaacagacctaatatgccagacaacagaggtaataa |
3360807 |
T |
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| Q |
119 |
cgaacaaagaatagaaagattaatgtagtaaatcagttatttcatgcggacaaagaaaaggtcatttaagttttaaattaataca-taagagaggcagga |
217 |
Q |
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| T |
3360808 |
cga----------------ttaatgtagtaaatcagttatttcatgcggacaaagaaaaggtcatttaagttttaaattaatacaataagagaggcagga |
3360891 |
T |
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| Q |
218 |
atagcaaataaatgcttcttgaactaagataaagtaccgagctttctcaacctcgggtttttcgggatcatctgatcccttttcatgaagctcaaaaaga |
317 |
Q |
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| T |
3360892 |
atagcaaataaatgcttcttgaactaagataaagtactgagctttctcaacctcgggtttttcgggatcatccgatccctttacatgaagctcaaaaaga |
3360991 |
T |
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| Q |
318 |
agttttgagctttgagagttttctgaagtttcaaaatcttcacctcctccctcccttatgataccattgtctggtgcatgttcagtaacatt |
409 |
Q |
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| T |
3360992 |
agttctgagctttgagagttttctgaagttttaaaatcttcacctcctccctcccttatgataccattgtctggtgcatgttcagtaacatt |
3361083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 35907115 - 35907177
Alignment:
| Q |
26 |
ctagtaaacatgttttgaaatcattatgtaaacacatcaaataagcatatacatattaaacag |
88 |
Q |
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|||||||||||||| || |||| |||| |||||||||||||||||||| |||| |||||||| |
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| T |
35907115 |
ctagtaaacatgttatgcaatctctatgcaaacacatcaaataagcatacacatcttaaacag |
35907177 |
T |
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