View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20271_high_3 (Length: 361)
Name: NF20271_high_3
Description: NF20271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20271_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 166 - 348
Target Start/End: Original strand, 38224432 - 38224614
Alignment:
| Q |
166 |
tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt |
265 |
Q |
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| T |
38224432 |
tattcattgcgggtttctctggtttcattccaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt |
38224531 |
T |
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| Q |
266 |
gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatct |
348 |
Q |
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| T |
38224532 |
gggttatacaaagcttgtttgctactctgattatcttgtttgcgttaatcttataaatggccccattgagtgttatcacatct |
38224614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 38224223 - 38224391
Alignment:
| Q |
1 |
gtcatgactgcgttttacttgcaacattaagaatttgattgagagcgttgtattcaatttttccccttctgtttctgttgctatggctaacaggtacatc |
100 |
Q |
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| T |
38224223 |
gtcatgactgcgttttacttgcaacattaagaattcgattgagagcattgtattcaatttttccccttctgtttctattgatatggctaacaggtacatc |
38224322 |
T |
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| Q |
101 |
agatggaataatattaatatttcgggtgctattcttaatgtggatggtagttaccatgacactcctatt |
169 |
Q |
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| T |
38224323 |
agatggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctatt |
38224391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 38945624 - 38945782
Alignment:
| Q |
166 |
tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt |
265 |
Q |
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| T |
38945624 |
tattcattgcgagtttctctgatttcattccaggatcatttgacatcttgttggccgagctttctgctatttatcacggtctgatcatggcgaaggattt |
38945723 |
T |
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| Q |
266 |
gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatg |
324 |
Q |
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| T |
38945724 |
gggttatacatagcttgtttgctactcggattctcttgtttgcattaatcttataaatg |
38945782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 38945499 - 38945582
Alignment:
| Q |
86 |
gctaacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagttaccatgacactcctatt |
169 |
Q |
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| T |
38945499 |
gctaacaagtacgtcagatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatatt |
38945582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 51303373 - 51303308
Alignment:
| Q |
87 |
ctaacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagtt |
152 |
Q |
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| T |
51303373 |
ctaacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtggatggaagtt |
51303308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 5204344 - 5204278
Alignment:
| Q |
87 |
ctaacaggtacatcagatggaa-taatattaatatttcgggtgctattcttaatgtggatggtagtt |
152 |
Q |
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| T |
5204344 |
ctaacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgtggatggaagtt |
5204278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 10470281 - 10470196
Alignment:
| Q |
246 |
ctgatcatggagaaggatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccat |
331 |
Q |
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| T |
10470281 |
ctgatcatggctaaagatttgagttatgcaaaacttgcttgctattctgattctcttgcttgcgtcaaccttattaatggtcccat |
10470196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 9536400 - 9536458
Alignment:
| Q |
94 |
gtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagtt |
152 |
Q |
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| T |
9536400 |
gtacatcagatggaataacaataatatcttgggtgcaattcttaacgtggatggaagtt |
9536458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 10470481 - 10470425
Alignment:
| Q |
90 |
acaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatg |
146 |
Q |
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| T |
10470481 |
acaggtacatcagatggaacaataataattttacaagtgttattcttaatgtggatg |
10470425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 1929123 - 1928965
Alignment:
| Q |
166 |
tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt |
265 |
Q |
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| T |
1929123 |
tattcattgtgggtatctctgatttcattctaggatcatttgacatcttgttggccgagctttctgctatctatcatggtctgatcatggagaaggattt |
1929024 |
T |
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| Q |
266 |
gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatg |
324 |
Q |
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| T |
1929023 |
gagttatacagagcttgtttgctactctgattctcttgtttgcattaatcttataaatg |
1928965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 1929603 - 1929518
Alignment:
| Q |
30 |
agaatttgattgagagcgttgtattcaatttttc--cccttctgtttctgttgctatggctaacaggtacatcagatggaataata |
113 |
Q |
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| T |
1929603 |
agaattcgattgagagcattgcactcaattttttttcccttatgtttctgctgctacgactaacaggtacatcagatggaataata |
1929518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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