View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20272_high_2 (Length: 320)
Name: NF20272_high_2
Description: NF20272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20272_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 5052153 - 5051867
Alignment:
| Q |
18 |
ccaaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaacatggcagtaagtaaagggaa |
117 |
Q |
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| T |
5052153 |
ccaaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaacatggcagtaagtaaagggaa |
5052054 |
T |
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| Q |
118 |
tgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgattggggccgggatcaatcaagtcagcaataatac |
217 |
Q |
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| T |
5052053 |
tgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgatcggggccgggatcaatcaagtcagcaacaatac |
5051954 |
T |
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| Q |
218 |
ataatttaacagttgggcaaagggctatcataattgttcaactaagtatcaaaatccattatccaattaaaatttggtaggtaatag |
304 |
Q |
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| T |
5051953 |
ataatttgacagttgggcaaagggctatcataattgttcaactaagtatcagaatcaattatccaatttaaatttggtaggtaatag |
5051867 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 51273452 - 51273493
Alignment:
| Q |
256 |
caactaagtatcaaaatccattatccaattaaaatttggtag |
297 |
Q |
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|||| |||||||| |||| ||||||||||||||||||||||| |
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| T |
51273452 |
caaccaagtatcagaatcgattatccaattaaaatttggtag |
51273493 |
T |
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