View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20272_high_4 (Length: 291)
Name: NF20272_high_4
Description: NF20272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20272_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 21492368 - 21492631
Alignment:
| Q |
18 |
aaaggattgtcatgagtaagatgacgacgaagaaaactctgtcaattgggcagcaataccactaattaatttggtgctggtgacgttgctaattaaaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
21492368 |
aaaggattgtcatgagtaagatgacgaagaagaaaactctgtcaattgggtagccataccactaattaagttggtgctggtgacgttgctaattaataat |
21492467 |
T |
|
| Q |
118 |
ttaggttgcaccactacttgagtatattctccaaacgaaaaggaagaaatagtaagcaaataatgtgtataaatatgtgtcatcaacatgcatgttcatt |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21492468 |
ttaggttgcaccactacttcagtatattctccaaacgaaaaggaagaaatagtgagcaaataatgtgtataaatatatgtcatcaacatgcatgctcatt |
21492567 |
T |
|
| Q |
218 |
cacttactatcaaaactacataatattatgagtatcatcatgtcttcaaaattaccatcttctt |
281 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21492568 |
cacatactatcaaaactacataatattatgagtatcatcatgtcttcaaaattaccatcttctt |
21492631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 281
Target Start/End: Original strand, 21488551 - 21488818
Alignment:
| Q |
23 |
attgtcatgagtaagatgacgacgaagaaaactctgtcaattgggcagcaataccactaattaatttggtgctggtgacgttgctaattaaaaatttagg |
122 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21488551 |
attgtcatgagtaagatgatgaagaagaaaaatctggtaattgggcagcaataccactaattaagttggtgctggtgacgttgctaattaaaaatttagg |
21488650 |
T |
|
| Q |
123 |
ttgcaccactacttgagtatattctccaaacgaaaaggaagaaatagtaagcaaataatgtgtataaatatgtgtcatcaacatgcatgttcattcac-- |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21488651 |
ttgcaccactacttcagtatattctccaaaggaaaaggaagaaatagtaagcaaatcatttgtataaatatgtgtcatcaacatgcatgctcattcacaa |
21488750 |
T |
|
| Q |
221 |
-------ttactatcaaaactacataatattatgagtatcatcatgtcttcaaaattaccatcttctt |
281 |
Q |
| |
|
||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21488751 |
ctcatcaatacaatcaaaacttcatactattatgagtatcatcatgtcttcaaaattaccatcttctt |
21488818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 21482340 - 21482402
Alignment:
| Q |
158 |
aggaagaaatagtaagcaaataatgtgtataaatatgtgtcatcaacatgcatgttcattcac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
21482340 |
aggaagaaatagtaagcaaataatgtgtataaatatgtgtcatcaacctgcatgctcattcac |
21482402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 21482440 - 21482473
Alignment:
| Q |
242 |
attatgagtatcatcatgtcttcaaaattaccat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21482440 |
attatgagtatcatcatgtcttcaaaattaccat |
21482473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University