View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20272_high_6 (Length: 245)
Name: NF20272_high_6
Description: NF20272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20272_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 53721170 - 53720943
Alignment:
| Q |
1 |
ttattagcaaacatgtgtgctgttcaatctttgttattttctacccactacttctttactgatgatccactcataatccacacatatcatatcctgtgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53721170 |
ttattagcaaacatgtgtgctgttcaatctttgttattttctacccactacttctttactgatgatccactcataatccacacatatcatatcctgtgcc |
53721071 |
T |
|
| Q |
101 |
tcactacttcagcatatcaatatatatatgctttgtctattgcatctgtatgtttgtttgtttactatgttgtaattattcctttatgatcctggaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53721070 |
tcactacttcagcatatcaatatatatatgctttgtctattgcatctgtatatttgtttgtttactatgttgtaattattcctttatgatcctggaaata |
53720971 |
T |
|
| Q |
201 |
ttatacataggatttagtaagatcagga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
53720970 |
ttatacataggatttagtaagatcagga |
53720943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University