View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20272_low_1 (Length: 556)
Name: NF20272_low_1
Description: NF20272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20272_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Complemental strand, 852433 - 851897
Alignment:
| Q |
16 |
gttgatgaggtaatcttgaacctatgcttaaacttttttcttgttaaacttgctttggatctgttaatgaacaaaaggtccgtcgtagtattgattgtag |
115 |
Q |
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| T |
852433 |
gttgatgaggtaatcttgaacctatgcttaaacttttttcttgttaaacttgctctggatctgttaatgaacaaaaggtccgtcgtagtattgattgtag |
852334 |
T |
|
| Q |
116 |
ttttagatggattcaacataggatcaatggaacctttttaattcataacctcttgacattcatattattataaatattcagtaaagcatataaagcgaca |
215 |
Q |
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| T |
852333 |
ttttagatggattcaacataggatcaatggaacctttttaattcataacctcttgacattcatattattataaatattcagtaaagcatataaagcgaca |
852234 |
T |
|
| Q |
216 |
gtgaaagaaaatggtaaagtagtactctatatgtttgactttcctagaatttaccacttgcaagctttttatacatatttccaattataaacatgtttcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
852233 |
gtgaaagaaaatggtaaagtagtactctatatgtaggactttcctagaatttaccacttgcaagcttattatacatatttccaattataaacatgtttcc |
852134 |
T |
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| Q |
316 |
a---tcttagtcttgtcacgatgcttcttgatttaacagttttagaatcatgtgatttggtttgtcannnnnnnaaccatctaaaggatgttaaataatt |
412 |
Q |
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| T |
852133 |
atcttcttagtcttgtcacgatgcttcttgatttaacaattttagaatcatgtgatttggtttgtcatttttttaaccatctaaagtatgttaaataatt |
852034 |
T |
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| Q |
413 |
tggatttattgatcaatgcctttggtttttgaatcttcttattctagttaagtgtttttcaaattagtgtgccaaatgtcatgcagttttctaatacttt |
512 |
Q |
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| T |
852033 |
tggatttattgctcaatgcctttggtttttgaatcttcttattctagttaagtgtttgtcaaattagtgtgccaaatgtcatgcagttttctaatacttt |
851934 |
T |
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| Q |
513 |
tgctcaagaaggaaaaaaccaagtcaccactcctttg |
549 |
Q |
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| T |
851933 |
tgctcaagaaggaaaaaaccaagtcaccactcctttg |
851897 |
T |
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