View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20272_low_4 (Length: 318)
Name: NF20272_low_4
Description: NF20272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20272_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 53721158 - 53721469
Alignment:
| Q |
1 |
tgtttgctaataagggaacattttgctcacttttaagacaatggtgcatcaagggccttaaccaagggacccttcattactaccnnnnnnnnaactccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53721158 |
tgtttgctaataagggaacattttgctcacttttaagacaatggtgcatcaagggccttaaccaagggacccttcattactaccttttttt-aactccaa |
53721256 |
T |
|
| Q |
101 |
ctccaagttgaaatgcccttcgaatttgtccaaggataatatctaccttctaccctactcatacggaggtgtctttgtcacaccattctcatgtcatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53721257 |
ctccaagttgaaatgcccttcgaatttgtccaaggataatatctaccttctaccctactcatacggaggtgtctttgtcacaccattctcatgtcatcat |
53721356 |
T |
|
| Q |
201 |
ctcatgaaagctctgtttctccaactcatcttcattaccatatagccggtgacgattatatata----ccct----cctctttgttttgactgcccttca |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
53721357 |
ctcatgaaagctctgtttctccaactcatcttcattaccatatagccggtgacgattatatatatatacccttattcctctttgttttgactgcccttca |
53721456 |
T |
|
| Q |
293 |
cttttattatcct |
305 |
Q |
| |
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||||||||||||| |
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| T |
53721457 |
cttttattatcct |
53721469 |
T |
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