View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20273_low_1 (Length: 631)
Name: NF20273_low_1
Description: NF20273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20273_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 37 - 369
Target Start/End: Complemental strand, 54080954 - 54080620
Alignment:
| Q |
37 |
tttagagggtatgcagtgtatttgttgttgatactctgaagaggttttgaagtat--ttatagctgctgaatgctcttgttttggtgtgaacatgtggaa |
134 |
Q |
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| T |
54080954 |
tttagagggtatgcagtgtatttgttgttgatactctgaagaggttttgaagtatatttatagccgctgaatgctctagttttggtgtgaacatgtggaa |
54080855 |
T |
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| Q |
135 |
tgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagccccttgaac |
234 |
Q |
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| T |
54080854 |
tgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagccccttgaac |
54080755 |
T |
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| Q |
235 |
atgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgac |
334 |
Q |
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| T |
54080754 |
atgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgac |
54080655 |
T |
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| Q |
335 |
tatatgcatgataatatgacatggtgtttttgctc |
369 |
Q |
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| T |
54080654 |
tatatgcatgataatatgacatggtgtttttgctc |
54080620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 402 - 616
Target Start/End: Complemental strand, 54080584 - 54080370
Alignment:
| Q |
402 |
ctgatcctttgcgtgaacagctcatctcatggttataggtgaggtagggattttgtctgtgcaccagaaagtctactttttgttttgccaatagtggtgg |
501 |
Q |
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| T |
54080584 |
ctgatcctttgcgtggacagctcatctcatggttataggtgaggtagggattttgtctgtgcaccagaaagtctactttttgttttgccaatagtggtgg |
54080485 |
T |
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| Q |
502 |
tgccactgtcagttccctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatat |
601 |
Q |
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| T |
54080484 |
tgccactgtcagtctcctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatat |
54080385 |
T |
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| Q |
602 |
ctaggtgttcattct |
616 |
Q |
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| T |
54080384 |
ctaggtgttcattct |
54080370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 116 - 337
Target Start/End: Complemental strand, 54084228 - 54084009
Alignment:
| Q |
116 |
ttggtgtgaacatgtggaatgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttg |
215 |
Q |
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| T |
54084228 |
ttggtgtgaaaatgcggaatgattattttaagtttgaggctagaaagtagaggagatcatattggcgtggcatatttgaatttggatggataaaaacttg |
54084129 |
T |
|
| Q |
216 |
tggttgaagccccttgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatga |
315 |
Q |
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| T |
54084128 |
tggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaataca--atgccgactcatacgatggccactctacttagtggaggatga |
54084031 |
T |
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| Q |
316 |
aaggctgtttattattgactat |
337 |
Q |
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|||| |||||||| |||||||| |
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| T |
54084030 |
aaggttgtttattgttgactat |
54084009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 616
Target Start/End: Complemental strand, 54083669 - 54083581
Alignment:
| Q |
523 |
ttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattct |
616 |
Q |
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| T |
54083669 |
ttttgtataagctagtagtggt----atatcattaactttttgttgcatgatgatcaatttgcacctagattactatatct-ggtgctcattct |
54083581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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