View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20273_low_10 (Length: 215)
Name: NF20273_low_10
Description: NF20273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20273_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 46894930 - 46894735
Alignment:
| Q |
1 |
ttgttttcttattaatctcaagttcatcaatccatcccaacattattctggaaattcataaccatcaaacacttccaaaataatgtcacaatctctgccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894930 |
ttgttttcttattaatctcaagttcatcaatccatcccaacattattctggaaattcataaccatcaaacacttccaaaataatgtcacaatctctgccg |
46894831 |
T |
|
| Q |
101 |
cttattaaaaacggtccctctctatatatagtgtaattcactaacttgatcaactcaacacatctttctatacacaccaacatggcttctatttcc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46894830 |
cttattaaaaacggtccctctctatatatagtgtaattcactaacttgatcaactcaacacatctttctatacacaccaacatggcttctatttcc |
46894735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University