View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20273_low_2 (Length: 515)

Name: NF20273_low_2
Description: NF20273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20273_low_2
NF20273_low_2
[»] chr3 (6 HSPs)
chr3 (16-449)||(19663925-19664358)
chr3 (441-498)||(19664773-19664830)
chr3 (160-205)||(9242796-9242841)
chr3 (172-224)||(1246579-1246631)
chr3 (254-302)||(49068843-49068891)
chr3 (164-208)||(51386881-51386925)
[»] chr6 (2 HSPs)
chr6 (164-210)||(2616979-2617025)
chr6 (164-218)||(5051641-5051695)
[»] chr5 (2 HSPs)
chr5 (164-218)||(29855472-29855526)
chr5 (247-305)||(30784246-30784304)
[»] chr2 (2 HSPs)
chr2 (164-222)||(15215493-15215551)
chr2 (247-305)||(34504252-34504310)
[»] chr1 (1 HSPs)
chr1 (164-220)||(42728526-42728582)
[»] chr8 (2 HSPs)
chr8 (164-222)||(7167938-7167996)
chr8 (162-214)||(30989576-30989628)
[»] chr4 (3 HSPs)
chr4 (164-214)||(26740747-26740797)
chr4 (164-204)||(29584782-29584822)
chr4 (164-204)||(32280418-32280458)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 19663925 - 19664358
Alignment:
Q  16 atgaacaacgagggatttataaattaagttttggtaccatacctacataaaataaacactaggttt-ctgcatgaaaaaatatatgaactgttagaaacc 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  19663925 atgaacaacgagggatttataagttaagttttggtaccatacctacataaaataaacactaggttttctgcatgaaaaaatatatgaactgtt-gaaacc 19664023  T
Q  115 ataaaagtgattatagaccaagtgttcgggttctatcttaaccgtatgataacttgtgcccttaaaacataagttaatgagtcaaatataaaaatatttt 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  19664024 ataaaagtgattatagaccaggtgttcgggttctatcttaaccgtatgataacttgtgcccttaaagcataagttaatggatcaaatataaaaatatttt 19664123  T
Q  215 gttgaaatccatgttttaaattaagaaaattaactttcaattaattgaatgcgcaaaatttaaaagaaaatttctacatttgagttgcttatctatcata 314  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19664124 gttgaaatccgtgttttaaattaagaaaattaactttcaattaattgaatgcgcaaaatttaaaagaaaatttctacatttaagttgcttatctatcata 19664223  T
Q  315 tgcacttagggcgcaagttagcttgatccataaattaatcactcactttgaatcaataatttattgttgattcaatcaaaa-atgataagtttaattatc 413  Q
    |||||||||| | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  19664224 tgcacttaggacacaagttagattgatccataaattaatcactcac-ttgaatcaataatttattgttgattcaatcaaaagatggtaagtttaattatc 19664322  T
Q  414 gttgttgatgtgagaacatttttatggataataata 449  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19664323 gttgttgatgtgagaacttttttatggataataata 19664358  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 19664773 - 19664830
Alignment:
Q  441 ataataatatctttataaacgcttattaagctttgaattatgccctcaaggacctacc 498  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  19664773 ataataatatctttataaactcttattaagctttgaattatgccctcaagtacctacc 19664830  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 9242796 - 9242841
Alignment:
Q  160 atgataacttgtgcccttaaaacataagttaatgagtcaaatataa 205  Q
    ||||| |||||||||||||| |||||||||||| | ||||||||||    
T  9242796 atgattacttgtgcccttaacacataagttaatcaatcaaatataa 9242841  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 1246579 - 1246631
Alignment:
Q  172 gcccttaaaacataagttaatgagtcaaatataaaaatattttgttgaaatcc 224  Q
    |||||||| ||| |||||||||| |||||| |||||||||||| ||| |||||    
T  1246579 gcccttaagacacaagttaatgaatcaaatgtaaaaatattttattggaatcc 1246631  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 49068891 - 49068843
Alignment:
Q  254 attaattgaatgcgcaaaatttaaaagaaaatttctacatttgagttgc 302  Q
    ||||||||||| | |||||||||| | || |||||||||||||||||||    
T  49068891 attaattgaatacacaaaatttaagaaaatatttctacatttgagttgc 49068843  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 51386925 - 51386881
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaa 208  Q
    |||||||||||||||||||||||||| |  ||| |||||||||||    
T  51386925 taacttgtgcccttaaaacataagtttagaagttaaatataaaaa 51386881  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 2616979 - 2617025
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaata 210  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||    
T  2616979 taacttgtgctcttaaaacacaagttaatgaatcaaatataaaaata 2617025  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 5051695 - 5051641
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaatattttgttg 218  Q
    |||| ||||| ||||| ||||||||||| |||||||||||| ||||||| |||||    
T  5051695 taacgtgtgctcttaagacataagttaacgagtcaaatatataaatattatgttg 5051641  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 29855526 - 29855472
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaatattttgttg 218  Q
    |||||| ||||||||| ||| |||| |||||||||||| ||||||||||||||||    
T  29855526 taacttatgcccttaagacacaagtaaatgagtcaaatgtaaaaatattttgttg 29855472  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 30784304 - 30784246
Alignment:
Q  247 actttcaattaattgaatgcgcaaaatttaaaagaaaatttctacatttgagttgctta 305  Q
    ||||| ||||||||||||||  ||||||||| | ||||||||||| |||||||| ||||    
T  30784304 acttttaattaattgaatgcataaaatttaagaaaaaatttctacttttgagtttctta 30784246  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 15215493 - 15215551
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaatattttgttgaaat 222  Q
    |||||| ||| ||||||||||||||||||||||||||  || |||||| ||||||||||    
T  15215493 taacttatgctcttaaaacataagttaatgagtcaaaagtagaaatatattgttgaaat 15215551  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 34504252 - 34504310
Alignment:
Q  247 actttcaattaattgaatgcgcaaaatttaaaagaaaatttctacatttgagttgctta 305  Q
    ||||| |||||||||||||| |||||||||| |||| |||| ||| ||||| |||||||    
T  34504252 acttttaattaattgaatgcacaaaatttaagagaatatttttacttttgaattgctta 34504310  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 42728582 - 42728526
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaatattttgttgaa 220  Q
    |||||||||||||| ||||| || ||||||||||||| || |||||||||| |||||    
T  42728582 taacttgtgcccttcaaacacaaattaatgagtcaaaaatgaaaatattttattgaa 42728526  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 7167996 - 7167938
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaatattttgttgaaat 222  Q
    |||||| || ||||||||||||||||||||| |||||||||  ||| | ||||||||||    
T  7167996 taacttatgtccttaaaacataagttaatgaatcaaatatagtaatttgttgttgaaat 7167938  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 30989628 - 30989576
Alignment:
Q  162 gataacttgtgcccttaaaacataagttaatgagtcaaatataaaaatatttt 214  Q
    ||||| ||||||||||||||||||||||||  ||| |||| ||||| ||||||    
T  30989628 gataatttgtgcccttaaaacataagttaagaagttaaatgtaaaattatttt 30989576  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 26740747 - 26740797
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatataaaaatatttt 214  Q
    |||||||||| ||||| ||| | |||||||| |||||||||||||||||||    
T  26740747 taacttgtgctcttaagacacacgttaatgaatcaaatataaaaatatttt 26740797  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 29584822 - 29584782
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatata 204  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  29584822 taacttgtgcccttaagacacaagttaatgaatcaaatata 29584782  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 32280458 - 32280418
Alignment:
Q  164 taacttgtgcccttaaaacataagttaatgagtcaaatata 204  Q
    |||||||||||||||| |||||||||||  |||||||||||    
T  32280458 taacttgtgcccttaagacataagttaagaagtcaaatata 32280418  T

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