View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20273_low_3 (Length: 423)
Name: NF20273_low_3
Description: NF20273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20273_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 15842508 - 15842628
Alignment:
| Q |
1 |
tctccattgcttctatgctctctgttggaaactcaatattctactgtccgaaggataaacaagtacatgcagacaatgcaagaatgaattttcacactgg |
100 |
Q |
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| T |
15842508 |
tctccattgcttctatgctctctgttggaaactcaatattctaccgtccgaaggataaacaagtacatgcagacaatgcaagaatgaattttcacactgg |
15842607 |
T |
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| Q |
101 |
agatgttggtgaccacattgc |
121 |
Q |
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| T |
15842608 |
agatgttggtgaccacattgc |
15842628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 15843092 - 15843196
Alignment:
| Q |
119 |
tgcctctggagggaagtacattacctgctgttttttgtaaatgattttctggctcacaattgttttgtgtatgttcgtagttctttctggctccgcagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||| ||||| |
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| T |
15843092 |
tgcctctggagggaagtacattacctgctgttttttgtaaatgattttctggctcacagttg--ttgtgtatattagtagttctttctggctccacagaa |
15843189 |
T |
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| Q |
219 |
gacttgg |
225 |
Q |
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||||||| |
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| T |
15843190 |
gacttgg |
15843196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 15843281 - 15843376
Alignment:
| Q |
312 |
ttttccttcctttgaatgttttgcttgttgtttgcaggatggaagtaagacatgctactttatttgctttggttaatcaaatggtgaagctatatt |
407 |
Q |
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| T |
15843281 |
ttttccttcctttgaatgtttcgcttgttgtttgcaggatggaagtaagacatgctactttattttctttgattaatcgaatggtgaagctatatt |
15843376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31996052 - 31996172
Alignment:
| Q |
1 |
tctccattgcttctatgctctctgttggaaactcaatattctactgtccgaaggataaacaagtacatgcagacaatgcaagaatgaattttcacactgg |
100 |
Q |
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||||||||||| ||||||| || |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31996052 |
tctccattgctgctatgctttccgttggaaactcaattttctaccgtccgagagataaacaagtacatgcagacaatgcaagaatgaactttcacactgg |
31996151 |
T |
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| Q |
101 |
agatgttggtgaccacattgc |
121 |
Q |
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|||||| |||||||||||||| |
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| T |
31996152 |
agatgtcggtgaccacattgc |
31996172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 24010505 - 24010625
Alignment:
| Q |
1 |
tctccattgcttctatgctctctgttggaaactcaatattctactgtccgaaggataaacaagtacatgcagacaatgcaagaatgaattttcacactgg |
100 |
Q |
| |
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||||||||||| ||||||| |||||||| |||||||| ||| |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
24010505 |
tctccattgctgctatgctttctgttggcggttcaatattttacagtccaaagaataaaaaggtacatgcagacaatgcaagaatgaattttcacactgg |
24010604 |
T |
|
| Q |
101 |
agatgttggtgaccacattgc |
121 |
Q |
| |
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| T |
24010605 |
aaatgttggtgaccacattgc |
24010625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 24011403 - 24011500
Alignment:
| Q |
308 |
ggtcttttccttcctttgaatgttttgcttgttgtttgcaggatggaagtaagacatgctactttatttgctttggttaatcaaatggtgaagctata |
405 |
Q |
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||||| || |||||||||||||||||||||| ||||||||| |||||| | |||||| ||||| | || |||| ||||||||| |||||||||||| |
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| T |
24011403 |
ggtctatttcttcctttgaatgttttgcttgctgtttgcagattggaaggaggacatgatacttcaattcttttgtttaatcaaagggtgaagctata |
24011500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 7288294 - 7288406
Alignment:
| Q |
3 |
tccattgcttctatgctctctgttggaaactcaatattctactgtccgaaggataaacaagtacatgcagacaatgcaagaatgaattttcacactggag |
102 |
Q |
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||||||||| ||||||| ||| |||||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
7288294 |
tccattgctgctatgctttctattggaaactcaatattttaccgtccaaaggataaacaagtgcatgcagacaatgcaaggctgaattttcacactggaa |
7288393 |
T |
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| Q |
103 |
atgttggtgacca |
115 |
Q |
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||||||| ||||| |
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| T |
7288394 |
atgttggagacca |
7288406 |
T |
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