View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20273_low_7 (Length: 265)
Name: NF20273_low_7
Description: NF20273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20273_low_7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4783608 - 4783358
Alignment:
| Q |
1 |
attttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4783608 |
attttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgataagataatct |
4783509 |
T |
|
| Q |
101 |
tggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttag |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |||| | |||||||| || |||| | |
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|
| T |
4783508 |
tggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgg |
4783409 |
T |
|
| Q |
201 |
gaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
4783408 |
gaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatatt |
4783358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4816037 - 4815787
Alignment:
| Q |
1 |
attttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||| |||||||| |
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|
| T |
4816037 |
attttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgatacgataatct |
4815938 |
T |
|
| Q |
101 |
tggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttag |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |||| | |||||||| || |||| | |
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|
| T |
4815937 |
tggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgg |
4815838 |
T |
|
| Q |
201 |
gaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
4815837 |
gaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatatt |
4815787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 4696950 - 4696713
Alignment:
| Q |
14 |
ttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatcttggtcactgaggt |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||| || || || | | | |||||| | | |||||||||||| |
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|
| T |
4696950 |
ttgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatcaaatgatattttgggtcactgaggt |
4696851 |
T |
|
| Q |
114 |
ttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttaggaatgaaagatat |
213 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||| || |||||||| |||||||||||||||||||| ||||||||| || | |||||||||| ||| |
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|
| T |
4696850 |
ttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttat |
4696751 |
T |
|
| Q |
214 |
gtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4696750 |
gtttaacttctcatttggtttggtttgaatgcaatatt |
4696713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4637179 - 4637429
Alignment:
| Q |
1 |
attttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| | | |||||||||| || | || | || | || |||| | |
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|
| T |
4637179 |
attttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttcaaatagtaattt |
4637278 |
T |
|
| Q |
101 |
tggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttag |
200 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4637279 |
gggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttag |
4637378 |
T |
|
| Q |
201 |
gaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
4637379 |
gaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatatt |
4637429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4711845 - 4711595
Alignment:
| Q |
1 |
attttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| | || ||||||||||||||| ||| ||| ||||||||||||||||| || || | || | | | || | | |
|
|
| T |
4711845 |
attttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttcaaaaggtatttt |
4711746 |
T |
|
| Q |
101 |
tggtcactgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttag |
200 |
Q |
| |
|
||||| | |||| |||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||| || |||||| |||| | |
|
|
| T |
4711745 |
gggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttg |
4711646 |
T |
|
| Q |
201 |
gaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
4711645 |
gaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatatt |
4711595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 4864257 - 4864497
Alignment:
| Q |
14 |
ttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatcttggtcactgaggt |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||| || || | || | || ||| | | ||||| |||||| |
|
|
| T |
4864257 |
ttgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggt |
4864356 |
T |
|
| Q |
114 |
ttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgtt---aggaatgaaaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| || || ||||| || |||||||||||||||||||| ||||| | || |||||||||| |
|
|
| T |
4864357 |
ttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagt |
4864456 |
T |
|
| Q |
211 |
tatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| |||||||||| |
|
|
| T |
4864457 |
tatgtttagcttctcatttgatttgatttgaatgcaatatt |
4864497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 4673031 - 4673267
Alignment:
| Q |
7 |
accaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatcttggtca |
106 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||| |||||| ||| ||| |||||||||||||| || || || | || | |||||||| | ||||| |
|
|
| T |
4673031 |
accaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttcaaatgataatttgggtca |
4673130 |
T |
|
| Q |
107 |
ctgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttaggaatga |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || |||| |||||| |||||||| |||||||| | | |||||||| ||| ||| || | ||||||| |
|
|
| T |
4673131 |
ctgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgcttggaatga |
4673230 |
T |
|
| Q |
207 |
aagatatgtttaacttctcatttggtttggtttggat |
243 |
Q |
| |
|
|| |||||||| ||||||||| || ||| ||||||| |
|
|
| T |
4673231 |
aatttatgtttagcttctcattgggcttgatttggat |
4673267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 4644034 - 4644200
Alignment:
| Q |
6 |
gaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatcttggtc |
105 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||||||| ||| ||| | | ||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
4644034 |
gaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtatggtatatcttcagagccatctaacttgatacgataatcttggtc |
4644133 |
T |
|
| Q |
106 |
actgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataa |
172 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
4644134 |
actgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4644200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4845785 - 4845535
Alignment:
| Q |
1 |
attttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatct |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||| |||||||| || ||| ||| || ||||| |||||||||| ||| ||| |||| || ||||| | |
|
|
| T |
4845785 |
attttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaataataattt |
4845686 |
T |
|
| Q |
101 |
tggtca-ctgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgtta |
199 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||||||||| ||||||| ||| ||||||| |||| |
|
|
| T |
4845685 |
aagtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttc |
4845587 |
T |
|
| Q |
200 |
ggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
|||| ||||| |||||||| |||| ||||||||||| | || |||||||||| |
|
|
| T |
4845586 |
ggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatatt |
4845535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 4653925 - 4654068
Alignment:
| Q |
108 |
tgaggtttgtgtaatatagaaaagaaggcatagatacaacttcgatcccgttaataaaagcataataaggatttgattggtttatgctgttaggaatgaa |
207 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||| |||||| || |||| |||||||| |
|
|
| T |
4653925 |
tgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaa |
4654024 |
T |
|
| Q |
208 |
agatatgtttaacttctcatttggtttggtttggatgcaatatt |
251 |
Q |
| |
|
|| |||||||| ||||| ||| |||| | |||||||||||||| |
|
|
| T |
4654025 |
agttatgtttagcttcttattcggttggacttggatgcaatatt |
4654068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 4667269 - 4667408
Alignment:
| Q |
7 |
accaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttgatattccgtgttgtcaaaaccaggtaaattgatatgataatcttggtca |
106 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||| |||| ||| || ||||| || ||||||| || |||| | | |||||||| | ||||| |
|
|
| T |
4667269 |
accaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtcaaatgataatttgggtca |
4667368 |
T |
|
| Q |
107 |
ctgaggtttgtgtaatatagaaaagaaggcatagatacaa |
146 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
4667369 |
ctgaggtttgtgtaatagagaaaagacggcatagacacaa |
4667408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 4644216 - 4644265
Alignment:
| Q |
200 |
ggaatgaaagatatgtttaacttctcatttggtttggtttggatgcaata |
249 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
4644216 |
ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaata |
4644265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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