View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20273_low_9 (Length: 222)
Name: NF20273_low_9
Description: NF20273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20273_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 42125670 - 42125870
Alignment:
| Q |
7 |
agaacctgtgagagaggtgagtatgagaccacgtagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatg |
106 |
Q |
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| T |
42125670 |
agaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatg |
42125769 |
T |
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| Q |
107 |
gtagcataggcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaagaaccatg |
206 |
Q |
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| T |
42125770 |
gtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaagaaccatg |
42125869 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
42125870 |
t |
42125870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 24929018 - 24929134
Alignment:
| Q |
56 |
gtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatggtagcataggcagtaatagtgaatggaatccaatgaaaggcaccacata |
155 |
Q |
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||||||| ||||||||||| ||||| |||||| | ||||||||||||||||||||||| ||| | | || ||||| ||||| ||||| |||||||||| |
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| T |
24929018 |
gtaaatgtaatggcaaaggtgatggggtttgatgggacttcagaaaacatggtagcatatgcaatgacggtaaatgggatccagtgaaaagcaccacata |
24929117 |
T |
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| Q |
156 |
tgcaaacaaatgaaaag |
172 |
Q |
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| T |
24929118 |
tgcaaacaaatgaaaag |
24929134 |
T |
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