View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_high_1 (Length: 602)
Name: NF20274_high_1
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 31797784 - 31797622
Alignment:
| Q |
18 |
agatatgttttctcataagaactttggagttgaaacagattatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagt |
117 |
Q |
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| T |
31797784 |
agatatgttttctcataagaactttggagttgaaacagattatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagt |
31797685 |
T |
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| Q |
118 |
gccatttttcatgaccataagtattcactatatcatccaatatgtaaaattgagcttatgaaa |
180 |
Q |
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| T |
31797684 |
gccatttttcatgaccataagtattcactaaatcatccaatatgtaaaattgagcttatgaaa |
31797622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 499 - 582
Target Start/End: Complemental strand, 31797624 - 31797541
Alignment:
| Q |
499 |
aaactttatatagaaatgcatgagcagggggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcct |
582 |
Q |
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| T |
31797624 |
aaactttatatagaaatgcatgagcagggggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcct |
31797541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 31786209 - 31786153
Alignment:
| Q |
527 |
gggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcctg |
583 |
Q |
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| T |
31786209 |
gggcctatatatgaaatagtatatactttgcaagcataggcttgattgggattcctg |
31786153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 31786930 - 31786851
Alignment:
| Q |
316 |
gagtctgccttgcaccgcactcatacctttaagcccattttgaaaaggtacattataaatttcgttcagctaatttcaaggaa |
398 |
Q |
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| T |
31786930 |
gagtttgccttgcactgcactcctacctttaagctcatcttgaaaaggtacat---aacttgggttcagctaatttcaaggaa |
31786851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 31787210 - 31787163
Alignment:
| Q |
131 |
accataagtattcactatatcatccaatatgtaaaattgagcttatga |
178 |
Q |
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| T |
31787210 |
accataagtattcactatatcatcaaataggtaaaatttatcttatga |
31787163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 526
Target Start/End: Complemental strand, 31786794 - 31786701
Alignment:
| Q |
434 |
attcatctcatagtatcttg-tgattaaaaaatcagcctaaaaagcttttagtatgtattttaataaaactttatatagaaatgcatgagcagg |
526 |
Q |
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| T |
31786794 |
attcatctcactatatcttgatgattaaaaaatcagtctaaaatgtgtttaccatgtgttttgataaaactctatagagaaatgcctgagcagg |
31786701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 31787349 - 31787308
Alignment:
| Q |
18 |
agatatgttttctcataagaactttggagttgaaacagatta |
59 |
Q |
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| T |
31787349 |
agatatgatttctcacaagaactttggagttgaaagagatta |
31787308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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