View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20274_high_3 (Length: 475)

Name: NF20274_high_3
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20274_high_3
NF20274_high_3
[»] chr1 (5 HSPs)
chr1 (17-459)||(47678466-47678908)
chr1 (17-453)||(47689752-47690186)
chr1 (329-456)||(6497818-6497945)
chr1 (71-168)||(6511030-6511127)
chr1 (329-459)||(6510769-6510899)
[»] chr5 (3 HSPs)
chr5 (71-186)||(27369133-27369248)
chr5 (333-430)||(28854730-28854827)
chr5 (333-442)||(28829057-28829166)
[»] scaffold0341 (2 HSPs)
scaffold0341 (71-168)||(12711-12808)
scaffold0341 (329-459)||(12449-12579)
[»] chr2 (1 HSPs)
chr2 (365-406)||(34218965-34219006)
[»] chr4 (1 HSPs)
chr4 (383-439)||(31697104-31697160)


Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 47678466 - 47678908
Alignment:
Q  17 aattctgagcaaggagaaacagaatttaagaacgaagtgttattgacagggaagcttcaacatcgaaatttagttaagctattaggtttctgcttacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678466 aattctgagcaaggagaaacagaatttaagaacgaagtgttattgacagggaagcttcaacatcgaaatttagttaagctattaggtttctgcttacaaa 47678565  T
Q  117 gaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattatatcatatttggtaagttgcaatattatctccaaccttacctttacat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678566 gaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattatatcatatttggtaagttgcaatattatctccaaccttacctttacat 47678665  T
Q  217 ttctatgatgaaataatgaaatatatatgtttaacaacttattaagttataaatattatatctttaaaattttggcttggctaattatgtagatccaatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47678666 ttctatgatgaaataatgaaatatatatgtttaacaacttattaagttataaatattatatctttaaaattttggcttggctaattatgcagatccaatc 47678765  T
Q  317 aagcgtgcaaatttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678766 aagcgtgcaaatttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttc 47678865  T
Q  417 atcgtgatctcaaaacaagtaacattttgctagatgaagagat 459  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47678866 atcgtgatctcaaaacaagtaacattttgctagatgaagagat 47678908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 47689752 - 47690186
Alignment:
Q  17 aattctgagcaaggagaaacagaatttaagaacgaagtgttattgacagggaagcttcaacatcgaaatttagttaagctattaggtttctgcttacaaa 116  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  47689752 aattctaagcaaggagaaacagaatttaagaacgaagtgttgctgacagggaagcttcaacatcgaaatttagttaaactactaggtttctgtttacaaa 47689851  T
Q  117 gaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattatatcatatttggtaagttgcaatattatctccaaccttacctttacat 216  Q
     || |||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||   ||||||||||| | |    
T  47689852 aaagagaaagactactaatttatgagtttgtctccaataaaagtcttgattatatcatatttggtaagttgcaatatttcctttgaccttacctttgctt 47689951  T
Q  217 ttctatgatgaaataatgaaatatatatgtttaacaacttattaagttataaatattatatctttaaaattttggcttggctaattatgtagatccaatc 316  Q
    ||||||||| ||| || || ||||||  ||  |||| ||| |||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||    
T  47689952 ttctatgataaaagaaagagatatat--gtcgaacacctttttaaattataaaaattatatctttataattttggcttgggtaattatgtagatccaatc 47690049  T
Q  317 aagcgtgcaaatttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttc 416  Q
    ||||||||| |||| |||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||    
T  47690050 aagcgtgcagatttgaattgggaaagacgctacaaaattataaaagatattgcccgtggtcttctttatcttcacgaagattctcgattacaaattgttc 47690149  T
Q  417 atcgtgatctcaaaacaagtaacattttgctagatga 453  Q
    | |||||||||||||||||||| ||||| ||||||||    
T  47690150 accgtgatctcaaaacaagtaatattttactagatga 47690186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 456
Target Start/End: Complemental strand, 6497945 - 6497818
Alignment:
Q  329 ttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctca 428  Q
    |||||||||||||  |||| |||||||||   || |||||| || ||| ||||||| ||||| || ||||||||| | |  ||| |||||||||||||||    
T  6497945 ttaaattgggaaatgcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattcatcgtgatctca 6497846  T
Q  429 aaacaagtaacattttgctagatgaaga 456  Q
    || ||||||||||| |  ||||||||||    
T  6497845 aagcaagtaacattctcttagatgaaga 6497818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 6511127 - 6511030
Alignment:
Q  71 cttcaacatcgaaatttagttaagctattaggtttctgcttacaaagaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgatta 168  Q
    |||||||| ||||||||||| |   || | ||||||||| || || ||| |||||| ||||| |||||||||||||| |  |||||||||||||||||    
T  6511127 cttcaacaccgaaatttagtaagattactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgatta 6511030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 459
Target Start/End: Complemental strand, 6510899 - 6510769
Alignment:
Q  329 ttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctca 428  Q
    |||||||||| ||| |||| |||||||||   || |||||| || ||| ||||||| ||||| || ||||||||| |||   || |||||||||||||||    
T  6510899 ttaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttattcatcgtgatctca 6510800  T
Q  429 aaacaagtaacattttgctagatgaagagat 459  Q
    || |||| || ||| |  | |||||||||||    
T  6510799 aagcaagcaatattctcttggatgaagagat 6510769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 27369248 - 27369133
Alignment:
Q  71 cttcaacatcgaaatttagttaagctattaggtttctgcttacaaagaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattata 170  Q
    ||||||||||||||| |||||| |||| | ||||||||  || || | | |||||| ||||| || ||||| |||||  | |||||||||||||||||      
T  27369248 cttcaacatcgaaatctagttaggctacttggtttctgtctagaagggagagaaagactacttatttatgaatttgtttcaaataaaagtcttgattact 27369149  T
Q  171 tcatatttggtaagtt 186  Q
    ||||||||||||||||    
T  27369148 tcatatttggtaagtt 27369133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 28854827 - 28854730
Alignment:
Q  333 attgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctcaaa 430  Q
    ||||||||| ||||| ||||||||| |||| |||||| || ||  |||| ||||||||||| ||||||||| |||  ||| | || ||||||||||||    
T  28854827 attgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaa 28854730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 442
Target Start/End: Complemental strand, 28829166 - 28829057
Alignment:
Q  333 attgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctcaaaac 432  Q
    |||||||||  |||| |||||||||  ||| |||| | || ||  |||||||||||||||||||||||||| |||  ||| | || |||||||| ||| |    
T  28829166 attgggaaaagcgctacaaaatcattcaaggtattactcgaggtgttctttatcttcatgaagattctcgactacgcattatacaccgtgatcttaaagc 28829067  T
Q  433 aagtaacatt 442  Q
    ||| ||||||    
T  28829066 aagcaacatt 28829057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 12808 - 12711
Alignment:
Q  71 cttcaacatcgaaatttagttaagctattaggtttctgcttacaaagaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgatta 168  Q
    |||||||| ||||||||||| |   || | ||||||||| || || ||| |||||| ||||| |||||||||||||| |  |||||||||||||||||    
T  12808 cttcaacaccgaaatttagtaagattactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgatta 12711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 459
Target Start/End: Complemental strand, 12579 - 12449
Alignment:
Q  329 ttaaattgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctca 428  Q
    |||||||||| ||| |||| |||||||||   || |||||| || ||| ||||||| ||||| || ||||||||| |||   || |||||||||||||||    
T  12579 ttaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttattcatcgtgatctca 12480  T
Q  429 aaacaagtaacattttgctagatgaagagat 459  Q
    || |||| || ||| |  | |||||||||||    
T  12479 aagcaagcaatattctcttggatgaagagat 12449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 34218965 - 34219006
Alignment:
Q  365 attgcacgtggccttctttatcttcatgaagattctcgatta 406  Q
    ||||| || ||||||||||||||||||||||||||| |||||    
T  34218965 attgctcgaggccttctttatcttcatgaagattctagatta 34219006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 31697104 - 31697160
Alignment:
Q  383 tatcttcatgaagattctcgattacaaattgttcatcgtgatctcaaaacaagtaac 439  Q
    ||||||||| ||||||||||||||  |||| ||||| | ||||||||| ||||||||    
T  31697104 tatcttcatcaagattctcgattaagaattattcatagagatctcaaagcaagtaac 31697160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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