View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20274_high_6 (Length: 421)

Name: NF20274_high_6
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20274_high_6
NF20274_high_6
[»] chr3 (10 HSPs)
chr3 (21-411)||(9564797-9565185)
chr3 (21-273)||(753688-753933)
chr3 (72-273)||(751896-752096)
chr3 (190-273)||(743781-743864)
chr3 (304-389)||(679193-679278)
chr3 (304-389)||(751000-751085)
chr3 (308-381)||(2632698-2632769)
chr3 (52-177)||(2483013-2483138)
chr3 (52-177)||(7439846-7439971)
chr3 (308-389)||(7317516-7317598)
[»] scaffold0019 (1 HSPs)
scaffold0019 (334-388)||(1337-1391)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 9565185 - 9564797
Alignment:
Q  21 atcggtttagaaataagaaaataccgaattattgagagtctagatagaaattgtttgagttatgtttgcataagagcatgaattttattttatgagtgag 120  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9565185 atcggtttagaaataagaaaatactgaattattgagagtctagatagaaattgtttgagttatgtttgcataagagcatgaattttattttatgagtgag 9565086  T
Q  121 tatatttgagtgttctttaaaactgaatggtttcaaatacagtaggagattggtgctannnnnnnnctattgaagttaaattgcataattctccattgat 220  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  9565085 tatatttgagtgttcttttaaactgaatggtttcaaatacagtaggagattggtgctattttttttctattgaagttaaattgcataattctccattgat 9564986  T
Q  221 tatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtatgcctcattttcannnnnnnnnnnnnnnctggttctgagaattagaag 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||    
T  9564985 tatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtatgcctcattttca--ttttttttttcttctggttctgagaattagaag 9564888  T
Q  321 aatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatggctatgtggcttagtgttcatc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9564887 aatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatggctatgtggcttagtgttcatc 9564797  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 753933 - 753688
Alignment:
Q  21 atcggtttagaaataagaaaataccgaattattgagagtctagatagaaattgtttgagttatgtttgcataagagcatgaattttattttatgagtgag 120  Q
    |||||||| || |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  753933 atcggtttggatataagaaaatactgaattattgagactctggatagaaattgtttgagttatgtttgcataagagtatgaattttattttaagagtgag 753834  T
Q  121 tatatttgagtgttctttaaaactgaatggtttcaaatacagtaggagattggtgctannnnnnnnctattgaagttaaattgcataattctccattgat 220  Q
     ||||| |||||||||||     | |||||||||||||||||||||||||||||||||        |  ||||||||||||||||| |||||||||||||    
T  753833 gatattagagtgttcttt-----taaatggtttcaaatacagtaggagattggtgcta--ttttttcagttgaagttaaattgcatgattctccattgat 753741  T
Q  221 tatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtat 273  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  753740 tatggaacgagtccagtgtgttgtgctttcacttggttgttggctgcatgtat 753688  T

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Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 72 - 273
Target Start/End: Complemental strand, 752096 - 751896
Alignment:
Q  72 tgtttgagttatgtttgcataagagcatgaattttattttatgagtgagtatatttgagtgttctttaaaactgaatggtttcaaatacagtaggagatt 171  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||    
T  752096 tgtttgagttatgtttgcataagactatgaattatattttaggagtgaggatattagagtgttcttttaaactgaatggtttcaaatacagtaggaaatt 751997  T
Q  172 ggtgctannnnnnnnctattgaagttaaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgt 271  Q
    |||||||        ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  751996 ggtgctattttttt-ctattgaagttaaattgcataattctccattgattatggaacgagtccagtgtgttgtactttcacttggttgttggctgcatgt 751898  T
Q  272 at 273  Q
    ||    
T  751897 at 751896  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 743864 - 743781
Alignment:
Q  190 ttgaagttaaattgcataattctccattgattatggaacgagtagagtgtgttgtactttcacttggttgttggctgcatgtat 273  Q
    ||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  743864 ttgaagttaaattgcatgattctccattgattatggaacgagtccagtgtgttgtactttcacttggttgttggctgcatgtat 743781  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 389
Target Start/End: Complemental strand, 679278 - 679193
Alignment:
Q  304 gttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg 389  Q
    ||||||||||||||||||||||||  | |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  679278 gttctgagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatg 679193  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 389
Target Start/End: Complemental strand, 751085 - 751000
Alignment:
Q  304 gttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg 389  Q
    ||||| ||||||||||||||||||  | |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  751085 gttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatg 751000  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 2632698 - 2632769
Alignment:
Q  308 tgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatg 381  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  2632698 tgagaattagaagaatgctgcat--atttgagtattttccaagataatgaaaaggtgaggttgttaacagaatg 2632769  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 2483013 - 2483138
Alignment:
Q  52 ttgagagtctagatagaaattgtttgagttatgtttgcataagagcatgaattttattttatgagtgagtatatttgagtgttctttaaaactgaatggt 151  Q
    |||||| ||||| |||||||||||||| | |||||||||   |||  ||||| |||||||| || || | ||||| |||| |||||    ||||||||||    
T  2483013 ttgagactctagctagaaattgtttgaataatgtttgcactggagtgtgaatattattttaggattgtggatattggagtattcttatggactgaatggt 2483112  T
Q  152 ttcaaatacagtaggagattggtgct 177  Q
    || ||||| |||||||||||||||||    
T  2483113 tttaaatagagtaggagattggtgct 2483138  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 7439971 - 7439846
Alignment:
Q  52 ttgagagtctagatagaaattgtttgagttatgtttgcataagagcatgaattttattttatgagtgagtatatttgagtgttctttaaaactgaatggt 151  Q
    |||||| ||||| |||||||| ||||||| |||||||||   |||  ||||| |||||||| || || | ||||| |||| |||||    ||||||||||    
T  7439971 ttgagactctagctagaaattatttgagtaatgtttgcactggagtgtgaatattattttaggattgtggatattggagtattcttatggactgaatggt 7439872  T
Q  152 ttcaaatacagtaggagattggtgct 177  Q
    |||||||| ||||||||||| |||||    
T  7439871 ttcaaatagagtaggagatttgtgct 7439846  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 7317598 - 7317516
Alignment:
Q  308 tgagaattagaag-aatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg 389  Q
    ||||||||||||| |||| || || | |||||||| ||| |||||   |||| ||||||||||||||||||||| ||||||||    
T  7317598 tgagaattagaaggaatgttgcatatgtttgagtacttttcaagatgatgaataggtgaggttgttaacagaatatcaacatg 7317516  T

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Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 1337 - 1391
Alignment:
Q  334 tttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacat 388  Q
    |||||||||||| |||||   |||||||||| |||||||||||||||||||||||    
T  1337 tttgagtatttttcaagatgatgaaaaggtgtggttgttaacagaatgtcaacat 1391  T

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