View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_low_11 (Length: 331)
Name: NF20274_low_11
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 13360459 - 13360655
Alignment:
| Q |
106 |
atttttgtattatgatattttatgaagggttttgtattatgagttagtgacatannnnnnnna-------ttattggcatggatccagtgaaagggactt |
198 |
Q |
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| T |
13360459 |
atttttgtattatgatattttatgaagggttttgtattatgagttagtgacatatttttttttattgattttattggcatgggtccagtgaaagagactt |
13360558 |
T |
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| Q |
199 |
gaagactcggaatagtgttacttctacttagaaacaca--tatcaggtatatatttaccaaactcatacactcatttcattacattatttatcacac |
293 |
Q |
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| T |
13360559 |
gaagactcggaatggtgttacttccacttagaaacacaaatatcaggtatatatttacaaaactcatacactcatttcattacattatttatcacac |
13360655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 13359623 - 13359731
Alignment:
| Q |
1 |
catattgtattaacttcaaaa--aattaaacattcttctctggttagcttctctccattctctccattcatttaacactttttcttcacatcaata-ttt |
97 |
Q |
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| T |
13359623 |
catattgtattaacttcaaaaaaaattaaacattcttctctggttagc---------ttctctccattcatttaacactttttcttcacatcaatatttt |
13359713 |
T |
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| Q |
98 |
gttaattaatttttgtat |
115 |
Q |
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| T |
13359714 |
gttaattattttttgtat |
13359731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 13359732 - 13359771
Alignment:
| Q |
75 |
actttttcttcacatcaatatttgttaattaatttttgta |
114 |
Q |
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| T |
13359732 |
actttttcttcacatcaatatttgttaattaatttttgta |
13359771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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