View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20274_low_13 (Length: 267)
Name: NF20274_low_13
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 46255908 - 46256107
Alignment:
| Q |
17 |
aatggagaaaaagaggaagaaaaatgactcacaacagccttggcaagagcctttgcaaataaatcaacaactgataaaccggagttattcaaaagctcct |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46255908 |
aatggagaaaatgaggaagaaaattgactaacaacaaccttggcaagagcctttgcaaataaatcaacaactgataaaccggagttattcaaaagctcct |
46256007 |
T |
|
| Q |
117 |
cagcagcagacttgaatgcaggaatcacactgcacttatgacatattttaagagcaaaatacagcattaaacaaaataggcaaataaaaacatacctatc |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46256008 |
cagcagcagacttgaatgcaggaattacactgcacttatgacatattttaagagcaaaatacagcattaaacaaaataggcaaataaaaacatacctatc |
46256107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 46246203 - 46246419
Alignment:
| Q |
15 |
aaaatggagaaaaagaggaagaaaaatgactcacaacagccttggcaagagcctttgcaaataaatcaacaactgataaaccggagttattcaaaagctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46246203 |
aaaatggagaaaaagaggaagaaaaatgactcacaacagccttggcaagagcctttgcaaataaatcaacaactgataaaccggagttattcaaaagctc |
46246302 |
T |
|
| Q |
115 |
ctcagcagcagacttgaatgcaggaatcacactgcacttatgacatattttaagagcaaaatacagcattaaacaaaataggcaaataaaaacataccta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
46246303 |
ctcagcagcagacttgaatgcaggaatcacactgcacttatgacatattttaag-----------------aacaaaataggcaaataaaaacatacata |
46246385 |
T |
|
| Q |
215 |
tctttatagcaaaagataaacatacctatcagac |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
46246386 |
tctttataccaaaagataaacatacctatcagac |
46246419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 20120631 - 20120734
Alignment:
| Q |
47 |
acaacagccttggcaagagcctttgcaaataaatcaacaactgataaaccggagttattcaaaagctcctcagcagcagacttgaatgcaggaatcacac |
146 |
Q |
| |
|
||||| ||||| |||||||| ||||| | ||| |||||| |||||||||| ||||| |||| ||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
20120631 |
acaaccgcctttgcaagagcttttgcgagtaactcaacagctgataaaccagagttgttcagaagttgctcagcagcagatttgaatgcaggaatcacac |
20120730 |
T |
|
| Q |
147 |
tgca |
150 |
Q |
| |
|
|||| |
|
|
| T |
20120731 |
tgca |
20120734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University