View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20274_low_14 (Length: 264)

Name: NF20274_low_14
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20274_low_14
NF20274_low_14
[»] chr7 (15 HSPs)
chr7 (11-248)||(29476513-29476750)
chr7 (27-242)||(29445835-29446050)
chr7 (124-247)||(29454277-29454400)
chr7 (124-243)||(29431176-29431295)
chr7 (116-248)||(29895225-29895363)
chr7 (20-94)||(29899031-29899105)
chr7 (180-248)||(29867068-29867136)
chr7 (197-248)||(29881102-29881153)
chr7 (124-166)||(29106581-29106623)
chr7 (197-248)||(29874356-29874407)
chr7 (124-166)||(29899141-29899183)
chr7 (138-248)||(29922160-29922270)
chr7 (20-89)||(29859108-29859177)
chr7 (121-162)||(29859215-29859256)
chr7 (44-84)||(29431344-29431384)
[»] scaffold0242 (2 HSPs)
scaffold0242 (39-248)||(13903-14112)
scaffold0242 (39-248)||(22738-22947)
[»] chr1 (4 HSPs)
chr1 (22-248)||(4366668-4366900)
chr1 (124-165)||(21855639-21855680)
chr1 (200-246)||(39379236-39379282)
chr1 (44-84)||(17561098-17561138)
[»] chr4 (4 HSPs)
chr4 (196-248)||(3561131-3561183)
chr4 (197-248)||(1686458-1686509)
chr4 (200-246)||(3557575-3557621)
chr4 (197-246)||(3565590-3565639)
[»] chr3 (1 HSPs)
chr3 (197-248)||(3625580-3625631)
[»] chr5 (1 HSPs)
chr5 (124-165)||(24331155-24331196)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 29476750 - 29476513
Alignment:
Q  11 cacagaatgaatgtgagaattctcagtcttggagataatgtttggagagaaattcaaagtttccccgttgttcccattcattcgtactttggtgaaaatg 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29476750 cacagaatgaatgtgagaattctcagttttggagataatgtttggagagagattcaaagtttccccgttgttcctattcattcgtactttggtgaaaatg 29476651  T
Q  111 atgtgcataatgctgtgtatttgagtagcactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29476650 atgtgcataatgctgtgtatttgagtagcactcttaattggttggctattcacaatgactttgactatgatattaagaatcttagagttgagcagtttgt 29476551  T
Q  211 tattgtttcactcgatttgggaactgagacatacaatc 248  Q
    |||||||||||||||||| |||||||||||||||||||    
T  29476550 tattgtttcactcgatttaggaactgagacatacaatc 29476513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 29446050 - 29445835
Alignment:
Q  27 gaattctcagtcttggagataatgtttggagagaaattcaaagtttccccgttgttcccattcattcgtactttggtgaaaatgatgtgcataatgctgt 126  Q
    ||||||| ||| | || ||||||||||||||| | |||||||||||||||||||||||  ||||||  ||||| |||| ||| | ||||||| || ||||    
T  29446050 gaattctaagtataggtgataatgtttggagacagattcaaagtttccccgttgttcctcttcatttctacttaggtggaaaagctgtgcatgattctgt 29445951  T
Q  127 gtatttgagtagcactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgat 226  Q
    |||||||||| | |||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  29445950 gtatttgagtggaactcttaattggttggctattcgcaatgaatttgactatgatattaaaaatcttagagttgagcagtttgttattgtttcattcgat 29445851  T
Q  227 ttgggaactgagacat 242  Q
    ||||| ||||||||||    
T  29445850 ttggggactgagacat 29445835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 29454400 - 29454277
Alignment:
Q  124 tgtgtatttgagtagcactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgttattgtttcactc 223  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||  ||||| ||| ||||||| | | ||||||||||||||||||| |||||||     
T  29454400 tgtgtatttgagcagcactcttaattggttggctattcacaatcacttgcactataatagtaagaatatcacagttgagcagtttgttattatttcactt 29454301  T
Q  224 gatttgggaactgagacatacaat 247  Q
    |||||||| |||||||| ||||||    
T  29454300 gatttggggactgagacgtacaat 29454277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 29431295 - 29431176
Alignment:
Q  124 tgtgtatttgagtagcactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgttattgtttcactc 223  Q
    ||||||| |||| || || |||||||||||||||||||||||| |||| |||||| ||  |||| || ||| | ||||||||||||||||| |||| ||     
T  29431295 tgtgtatctgagcagaacacttaattggttggctattcacaatcacttgaactattattctaaggatattacaattgagcagtttgttattctttcgctt 29431196  T
Q  224 gatttgggaactgagacata 243  Q
    |||||||| |||||||||||    
T  29431195 gatttggggactgagacata 29431176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 29895225 - 29895363
Alignment:
Q  116 cataatgctgtgtatttgagtagcactcttaattggttggctattcacaatgact------ttaactatgatattaagaatcttagagttgagcagtttg 209  Q
    ||||||| ||||||||| |||  ||||||||| ||||| |||||||||||| ||       || |||| ||| |||||||||||||||||||||| ||||    
T  29895225 cataatggtgtgtatttcagtgacactcttaactggttagctattcacaatcacaatggcattgactacgattttaagaatcttagagttgagcaatttg 29895324  T
Q  210 ttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    |||||||||| || ||  ||||||| ||||| |||||||    
T  29895325 ttattgtttcgcttgagctgggaacggagacttacaatc 29895363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 29899031 - 29899105
Alignment:
Q  20 aatgtgagaattctcagtcttggagataatgtttggagagaaattcaaagtttccccgttgttcccattcattcg 94  Q
    ||||||| |||||||||| |||| ||||||||||||||||| ||| |||||||||| ||||||||  ||||||||    
T  29899031 aatgtgaaaattctcagttttggtgataatgtttggagagatattgaaagtttcccagttgttcctcttcattcg 29899105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 29867068 - 29867136
Alignment:
Q  180 atattaagaatcttagagttgagcagtttgttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    |||||||| || |||  ||||| |||||||||||||||||||| |||||||| ||||||| ||||||||    
T  29867068 atattaaggatattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaatc 29867136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 29881102 - 29881153
Alignment:
Q  197 gttgagcagtttgttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    ||||| || ||||||||||||||||| |||||||| ||||||||||||||||    
T  29881102 gttgaccaatttgttattgtttcacttgatttggggactgagacatacaatc 29881153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 29106581 - 29106623
Alignment:
Q  124 tgtgtatttgagtagcactcttaattggttggctattcacaat 166  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  29106581 tgtgtatttgagtggcactcttaactggttggctattcacaat 29106623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 29874356 - 29874407
Alignment:
Q  197 gttgagcagtttgttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    |||||| | ||||||||||||||| | |||||| ||||||||||||||||||    
T  29874356 gttgagaattttgttattgtttcatttgatttgagaactgagacatacaatc 29874407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 29899141 - 29899183
Alignment:
Q  124 tgtgtatttgagtagcactcttaattggttggctattcacaat 166  Q
    ||| ||||||||| |||||||||||||||| ||||||||||||    
T  29899141 tgtatatttgagtggcactcttaattggttagctattcacaat 29899183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 29922270 - 29922160
Alignment:
Q  138 gcactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttgggaactga 237  Q
    ||||| |||| ||||||||||| ||||| ||| ||  ||||  | |||||||| ||| |||||| || |||||||| ||||| || ||||| || || ||    
T  29922270 gcacttttaactggttggctatccacaacgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtttctcttgatttagggacgga 29922171  T
Q  238 gacatacaatc 248  Q
    |||||||||||    
T  29922170 gacatacaatc 29922160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 29859108 - 29859177
Alignment:
Q  20 aatgtgagaattctcagtcttggagataatgtttggagagaaattcaaagtttccccgttgttcccattc 89  Q
    |||||||||||||| ||| | || ||||| ||||||||||| ||| |||||||||| |||| ||| ||||    
T  29859108 aatgtgagaattctaagtttgggtgataacgtttggagagatattgaaagtttcccggttgatcctattc 29859177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 29859215 - 29859256
Alignment:
Q  121 tgctgtgtatttgagtagcactcttaattggttggctattca 162  Q
    |||||| ||||| ||||| |||||||||||||||||||||||    
T  29859215 tgctgtttatttcagtagtactcttaattggttggctattca 29859256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 29431384 - 29431344
Alignment:
Q  44 gataatgtttggagagaaattcaaagtttccccgttgttcc 84  Q
    ||||||||||||||||| ||| |||||||||| ||||||||    
T  29431384 gataatgtttggagagatattgaaagtttccctgttgttcc 29431344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 14112 - 13903
Alignment:
Q  39 ttggagataatgtttggagagaaattcaaagtttccccgttgttcccattcattcgtactttggtgaaaatgatgtgcataatgctgtgtatttgagtag 138  Q
    ||||| || ||| ||||| ||| |||||||||||||| ||||||||  | ||||| || || ||||||||||||||||||||||||||||||||||||||    
T  14112 ttggacattatggttggaaagatattcaaagtttccctgttgttcctgtccattcctatttcggtgaaaatgatgtgcataatgctgtgtatttgagtag 14013  T
Q  139 cactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttgggaactgag 238  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  14012 cactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactgag 13913  T
Q  239 acatacaatc 248  Q
    ||||||||||    
T  13912 acatacaatc 13903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 22947 - 22738
Alignment:
Q  39 ttggagataatgtttggagagaaattcaaagtttccccgttgttcccattcattcgtactttggtgaaaatgatgtgcataatgctgtgtatttgagtag 138  Q
    ||||| || ||| ||||| ||| |||||||||||||| ||||||||  | ||||| || || ||||||||||||||||||||||||||||||||||||||    
T  22947 ttggacattatggttggaaagatattcaaagtttccctgttgttcctgtccattcctatttcggtgaaaatgatgtgcataatgctgtgtatttgagtag 22848  T
Q  139 cactcttaattggttggctattcacaatgactttaactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttgggaactgag 238  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  22847 cactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactgag 22748  T
Q  239 acatacaatc 248  Q
    ||||||||||    
T  22747 acatacaatc 22738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 4366900 - 4366668
Alignment:
Q  22 tgtgagaattctcagtcttggagataatgtttggagagaaattcaaagtttccccgttgttcccattcattcgtactttggtgaaaatgatgtgcataat 121  Q
    |||||| ||||| ||| | || ||||| ||||||||||| ||| ||||||| ||  |||||||  |||||| | ||||||| ||| || ||  | ||       
T  4366900 tgtgaggattctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggactttggggaatattattggaatgca 4366801  T
Q  122 gctgtgtatttgagtagcactcttaattggttggctattcacaatgactttaactatgatat------taagaatcttagagttgagcagtttgttattg 215  Q
    | ||||||||||||| |||| ||||||||||| || |||||||||||| || | ||| ||||      ||||||| |||  |||||||| ||||||||||    
T  4366800 ggtgtgtatttgagtggcacgcttaattggttagcaattcacaatgacattcattataatattaaggataagaatattaccgttgagcaatttgttattg 4366701  T
Q  216 tttcactcgatttgggaactgagacatacaatc 248  Q
    |||| || ||| |||| || |||||||||||||    
T  4366700 tttcgcttgatctgggtacagagacatacaatc 4366668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 21855680 - 21855639
Alignment:
Q  124 tgtgtatttgagtagcactcttaattggttggctattcacaa 165  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  21855680 tgtgtatttgagtggcgctcttaattggttggctattcacaa 21855639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 39379282 - 39379236
Alignment:
Q  200 gagcagtttgttattgtttcactcgatttgggaactgagacatacaa 246  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  39379282 gagcagattgttattgtttcacttgatttggggactgaaacatacaa 39379236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 17561138 - 17561098
Alignment:
Q  44 gataatgtttggagagaaattcaaagtttccccgttgttcc 84  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  17561138 gataacgtttggagagatattcaaagtttcccggttgttcc 17561098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 3561183 - 3561131
Alignment:
Q  196 agttgagcagtttgttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  3561183 agttgagcagtttgttattgtttcgcttgatctgggaactgagacatacaatc 3561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 1686509 - 1686458
Alignment:
Q  197 gttgagcagtttgttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    ||||| ||| ||||||||||||||||  ||||||| ||||||||||||||||    
T  1686509 gttgaacagattgttattgtttcacttaatttggggactgagacatacaatc 1686458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 3557575 - 3557621
Alignment:
Q  200 gagcagtttgttattgtttcactcgatttgggaactgagacatacaa 246  Q
    |||||| |||||||||||||||| |||||||| |||||| |||||||    
T  3557575 gagcagattgttattgtttcacttgatttggggactgagtcatacaa 3557621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 3565590 - 3565639
Alignment:
Q  197 gttgagcagtttgttattgtttcactcgatttgggaactgagacatacaa 246  Q
    ||||||||| |||||||||||||||| ||||| || |||||| |||||||    
T  3565590 gttgagcagattgttattgtttcacttgatttagggactgagtcatacaa 3565639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 3625580 - 3625631
Alignment:
Q  197 gttgagcagtttgttattgtttcactcgatttgggaactgagacatacaatc 248  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  3625580 gttgagcaatttgttattgtttcacttgatttggggactgagacatacaatc 3625631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 24331196 - 24331155
Alignment:
Q  124 tgtgtatttgagtagcactcttaattggttggctattcacaa 165  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  24331196 tgtgtatttgagtggcgctcttaattggttggctattcacaa 24331155  T

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