View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_low_15 (Length: 239)
Name: NF20274_low_15
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 32009473 - 32009687
Alignment:
| Q |
25 |
attatttaggaaggtgatcttcatagttgagtttatttgccaagtgcatgtgctaattataaataacatttttacttgagacctaatttcttacagaaca |
124 |
Q |
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| T |
32009473 |
attatttaggaaggtgatcttgatagttgagtttatttgccaagtgcatgtgctaattataaataacatttttacttgagacctaatttcttacagaaca |
32009572 |
T |
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| Q |
125 |
ataatgaaattttttggtagggctcgtgggattggaatgtcttgtgctattgggtagataattcttctgcttacatacaacttcattaagcagggcattt |
224 |
Q |
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| T |
32009573 |
ataatgaaattttttggtagggctcgtgggattggaatgtcttgtgctattgggtaggttctactgctgcttacatacaacttaattaagtagggacctt |
32009672 |
T |
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| Q |
225 |
agaaatgggaatgaa |
239 |
Q |
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| T |
32009673 |
agaaatgggaatgaa |
32009687 |
T |
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