View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_low_18 (Length: 220)
Name: NF20274_low_18
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 8846207 - 8846038
Alignment:
| Q |
24 |
agtaccacccaatttgtaaggcacatggtctccttcctattccatcttcgtggagccttaatggac-ccccaatccttacccaacttcctctcttaaaat |
122 |
Q |
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| T |
8846207 |
agtaccacccaatttgtaaggcacatggtctccttcctattccatcttcgtggagccttaatggaccccccaatccttacccaacttcctctcttaaaat |
8846108 |
T |
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| Q |
123 |
caataccatccctttcttcnnnnnnnattcattctccttttatttattgctttgttaagtccctttcattt |
193 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8846107 |
caataccatccctttcttc-ttttttattcattctccttttatttattgctttgttaagtccctttcattt |
8846038 |
T |
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