View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20274_low_2 (Length: 534)

Name: NF20274_low_2
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20274_low_2
NF20274_low_2
[»] chr3 (9 HSPs)
chr3 (226-516)||(925967-926257)
chr3 (226-506)||(44702589-44702869)
chr3 (225-274)||(4584433-4584482)
chr3 (225-273)||(1941719-1941767)
chr3 (226-274)||(6460168-6460216)
chr3 (226-274)||(26948979-26949027)
chr3 (226-274)||(36076454-36076502)
chr3 (221-273)||(38653922-38653974)
chr3 (221-273)||(40014648-40014700)
[»] chr4 (3 HSPs)
chr4 (226-506)||(5454471-5454752)
chr4 (225-274)||(37590803-37590852)
chr4 (226-274)||(16904952-16905000)
[»] chr8 (3 HSPs)
chr8 (12-226)||(5355226-5355440)
chr8 (226-270)||(34815241-34815285)
chr8 (226-274)||(23353622-23353670)
[»] chr5 (3 HSPs)
chr5 (225-506)||(41391476-41391757)
chr5 (251-506)||(43026117-43026361)
chr5 (226-274)||(20655049-20655097)
[»] chr6 (5 HSPs)
chr6 (27-91)||(6128312-6128375)
chr6 (226-270)||(24165091-24165135)
chr6 (226-274)||(3593074-3593122)
chr6 (19-99)||(6687003-6687083)
chr6 (226-274)||(8539734-8539782)
[»] chr1 (3 HSPs)
chr1 (226-276)||(18855233-18855283)
chr1 (225-274)||(52687113-52687162)
chr1 (225-273)||(31018199-31018247)
[»] chr7 (4 HSPs)
chr7 (226-274)||(13786351-13786399)
chr7 (226-274)||(16376545-16376593)
chr7 (221-273)||(21804567-21804619)
chr7 (226-274)||(40969072-40969120)
[»] chr2 (2 HSPs)
chr2 (226-274)||(8700442-8700490)
chr2 (226-274)||(19596363-19596411)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 226 - 516
Target Start/End: Complemental strand, 926257 - 925967
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatgcaatatattgatattatagatgcaaataacatatggaaagtgatactccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  926257 actagacctttcacccgtgctgacgcccgggtcatatacattatagatgcaatatattgatattatagatgcaaataacatatggaaagttatactccaa 926158  T
Q  326 agtgagtgtgtaaaattatagttcaatgaatttatttgacatgttgcaagcttaaatcagccaatgattaaccatatgacataacctaacaaactccctg 425  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  926157 agtgagtgtgtaaaattatagttcaatgaatttatttgacctgttgtaagcttaaatcagccaatgattaaccatatgacataacctaacaaactccctg 926058  T
Q  426 tattttagtttaaccatccattacgatagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaaggtggaaaaa 516  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  926057 tattttagtttaaccatccattatgacagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaaggtggaaaaa 925967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 226 - 506
Target Start/End: Original strand, 44702589 - 44702869
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatgcaatatattgatattatagatgcaaataacatatggaaagtgatactccaa 325  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  44702589 actagacctttcacccgtgctaacacccgggtcatgtacattatagatgcaatatattgatattatagatgcaaataatatatggaaagtaatactccaa 44702688  T
Q  326 agtgagtgtgtaaaattatagttcaatgaatttatttgacatgttgcaagcttaaatcagccaatgattaaccatatgacataacctaacaaactccctg 425  Q
    ||||||||||||  |||| ||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||| | ||||| |||||||| ||||||    
T  44702689 agtgagtgtgtagcattacagttcaatgaatttatttgacctgttctaagcttaaatcagccaatgcttaaccatacggcataagctaacaaattccctg 44702788  T
Q  426 tattttagtttaaccatccattacgatagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaa 506  Q
    |||||  |||||||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  44702789 tatttatgtttaaccatccattatgacagaccaacgctaacatcaaccattgaaacttatgtcaacagaaaagcaaggaaa 44702869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 4584433 - 4584482
Alignment:
Q  225 cactagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    |||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  4584433 cactagactttccacccgtgctgccgcacgggtcatatacattgtagatg 4584482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 1941719 - 1941767
Alignment:
Q  225 cactagacctttcacccgtgctgacgcccgggtcatatacattatagat 273  Q
    |||||||| || ||||||||||| ||| ||||||||||||||| |||||    
T  1941719 cactagactttccacccgtgctgccgcacgggtcatatacattgtagat 1941767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 6460168 - 6460216
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  6460168 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 6460216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 26949027 - 26948979
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  26949027 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 26948979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 36076454 - 36076502
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  36076454 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 36076502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 38653922 - 38653974
Alignment:
Q  221 taatcactagacctttcacccgtgctgacgcccgggtcatatacattatagat 273  Q
    |||| ||||||| || ||||||||||| ||| ||||||||||||||| |||||    
T  38653922 taataactagactttccacccgtgctgccgcacgggtcatatacattgtagat 38653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 40014648 - 40014700
Alignment:
Q  221 taatcactagacctttcacccgtgctgacgcccgggtcatatacattatagat 273  Q
    |||| ||||||| || ||||||||||| ||| ||||||||||||||| |||||    
T  40014648 taattactagactttccacccgtgctgccgcacgggtcatatacattgtagat 40014700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 226 - 506
Target Start/End: Complemental strand, 5454752 - 5454471
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcata-tacattatagatgcaatatattgatattatagatgcaaataacatatggaaagtgatactcca 324  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5454752 actagacctttcatccgtgctgccgcccgggtcataatacattatagatgcaatatattgatattatagatgcaaataatatatggaaagtgatactcca 5454653  T
Q  325 aagtgagtgtgtaaaattatagttcaatgaatttatttgacatgttgcaagcttaaatcagccaatgattaaccatatgacataacctaacaaactccct 424  Q
    ||||||||||||| ||| | |||||||| |||||||||||| ||||  ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  5454652 aagtgagtgtgtagaatcacagttcaattaatttatttgacctgttttaagcttaaatcagccaatgcttaaccatacgacataagctaacaaactccct 5454553  T
Q  425 gtattttagtttaaccatccattacgatagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaa 506  Q
    ||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454552 gtatttatgtttaaccatccattatgatggaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaa 5454471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 37590803 - 37590852
Alignment:
Q  225 cactagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    |||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  37590803 cactagactttccacccgtgctgccgcacgggtcatatacattgtagatg 37590852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 16904952 - 16905000
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  16904952 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 16905000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 5355226 - 5355440
Alignment:
Q  12 cacagagccctcaatccaaaacctcttttgaatttcctctttgatggtgttgactctcactcaagaatctcataaaaagcactcaacacaagtgtcatgg 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5355226 cacagagccctcaatccaaaacgtcttttgaatttcctctttgatggtgttgactctcactcaagaatctcataaaaagcactcaacacaagtgtcatgg 5355325  T
Q  112 atttatctttttgttccctctccttacgtctcattcttgtctttcaaaagacaccaaccattagggttatattttcccataatccccttttttggtacta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5355326 atttatctttttgttccctctccttacgtctcattcttgtcttccaaaagacaccaaccattagggttatattttcgcataatccccttttttggtacta 5355425  T
Q  212 tgagattcttaatca 226  Q
    |||||||||||||||    
T  5355426 tgagattcttaatca 5355440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 34815285 - 34815241
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattata 270  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||    
T  34815285 actagacttatcacccgtgctgacgcacgggtcatatacattata 34815241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 23353622 - 23353670
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  23353622 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 23353670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 9e-96; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 225 - 506
Target Start/End: Original strand, 41391476 - 41391757
Alignment:
Q  225 cactagacctttcacccgtgctgacgcccgggtcatatacattatagatgcaatatattgatattatagatgcaaataacatatggaaagtgatactcca 324  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  41391476 cactagacctttcacccgtgttgacgcacgggtcatatacattatagatgcattatattgatattatagatgcaaataatatatggaaagtgatgctcca 41391575  T
Q  325 aagtgagtgtgtaaaattatagttcaatgaatttatttgacatgttgcaagcttaaatcagccaatgattaaccatatgacataacctaacaaactccct 424  Q
    ||||||||||||| ||||| ||| ||||||||||||||||| ||||  ||||||||||||||||||| ||||||||| | || || ||||||||||||||    
T  41391576 aagtgagtgtgtagaattacagtacaatgaatttatttgacctgttctaagcttaaatcagccaatgcttaaccatacggcagaagctaacaaactccct 41391675  T
Q  425 gtattttagtttaaccatccattacgatagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaa 506  Q
     |||||  |||||||||| ||||| || |||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  41391676 atatttatgtttaaccattcattatgacagacgaacactaacattaactattgaaactgatatcaacagaaaagcaaggaaa 41391757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 251 - 506
Target Start/End: Original strand, 43026117 - 43026361
Alignment:
Q  251 cccgggtcatatacattatagatgcaatatattgatattatagatgcaaataacatatggaaagtgatactccaaagtgagtgtgtaaaattatagttca 350  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||          | |||||||||||||||||||||    
T  43026117 cccgggtcatatacgttatagatgcaatatattgatattatagatgcaaataacatatggaaagcgaa---------taagtgtgtaaaattatagttca 43026207  T
Q  351 atgaatttatttgacatgttgcaagcttaaatcagccaatgattaaccatatgacataacctaacaaactccctgtattttagtttaaccatccattacg 450  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||||| | ||||| ||||||||||||  |||||||||||||||||||||||| |    
T  43026208 atgaatttatttgacctgttgtaagcttaaatcagccaatgcttaaccatacggcataagctaacaaactcc--gtattttagtttaaccatccattatg 43026305  T
Q  451 atagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaa 506  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43026306 acagaccaacgctaacatcaaccattgaaactgatatcaacagaaaagcaaggaaa 43026361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 20655049 - 20655097
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  20655049 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 20655097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 6128312 - 6128375
Alignment:
Q  27 ccaaaacctcttttgaatttcctctttgatggtgttgactctcactcaagaatctcataaaaagc 91  Q
    |||||| | |||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  6128312 ccaaaagcccttttgaattccctctttgatggtgttgactcgcac-caagaatctcacaaaaagc 6128375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 24165091 - 24165135
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattata 270  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||    
T  24165091 actagacttatcacccgtgctgacgcacgggtcatatacattata 24165135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 3593122 - 3593074
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  3593122 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 3593074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 6687083 - 6687003
Alignment:
Q  19 ccctcaatccaaaacctcttttgaatttcctctttgatggtgttgactctcactcaagaatctcataaaaagcactcaaca 99  Q
    ||||||| |||||||| |||| || |||||||||||||  |||||  |||||  ||| ||||||| || ||||||||||||    
T  6687083 ccctcaacccaaaacccctttcgagtttcctctttgattatgttggatctcatccaaaaatctcacaagaagcactcaaca 6687003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 8539782 - 8539734
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  8539782 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 8539734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 18855233 - 18855283
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatgca 276  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||||    
T  18855233 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgca 18855283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 52687113 - 52687162
Alignment:
Q  225 cactagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    |||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  52687113 cactagactttccacccgtgctgtcgcacgggtcatatacattgtagatg 52687162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 31018199 - 31018247
Alignment:
Q  225 cactagacctttcacccgtgctgacgcccgggtcatatacattatagat 273  Q
    |||||||| || ||||||||||| ||| ||||||||||||||| |||||    
T  31018199 cactagactttccacccgtgctgccgcacgggtcatatacattgtagat 31018247  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 13786399 - 13786351
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  13786399 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 13786351  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 16376545 - 16376593
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  16376545 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 16376593  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 21804567 - 21804619
Alignment:
Q  221 taatcactagacctttcacccgtgctgacgcccgggtcatatacattatagat 273  Q
    |||| ||||||| || ||||||||||| ||| ||||||||||||||| |||||    
T  21804567 taataactagactttccacccgtgctgccgcacgggtcatatacattgtagat 21804619  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 40969120 - 40969072
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  40969120 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 40969072  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 8700490 - 8700442
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  8700490 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 8700442  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 19596363 - 19596411
Alignment:
Q  226 actagacctttcacccgtgctgacgcccgggtcatatacattatagatg 274  Q
    ||||||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  19596363 actagactttccacccgtgctgccgcacgggtcatatacattgtagatg 19596411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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