View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20274_low_4 (Length: 451)

Name: NF20274_low_4
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20274_low_4
NF20274_low_4
[»] chr1 (2 HSPs)
chr1 (91-437)||(46245790-46246136)
chr1 (91-435)||(46255481-46255830)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 91 - 437
Target Start/End: Complemental strand, 46246136 - 46245790
Alignment:
Q  91 agaggtttattgtgtaatgtgcagggttatactgagatcaagaaaagatctcttctctcttcaatggagaactatgttacattacttctcgagaacgaga 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246136 agaggtttattgtgtaatgtgcagggttatactgagatcaagaaaagatctcttctctcttcaatggagaactatgttacattacttctcgagaacgaga 46246037  T
Q  191 aacctatctttaccccaacgtaagaactttacaaatgaatttggttacaaacttattatgtcagnnnnnnnatcagtagcagttaaactcagtatctgga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  46246036 aacctatctttaccccaacgtaagaactttacaaatgaatttggttacaaacttattatgtcagtttttttatcagtagcagttaaactcagtatctgga 46245937  T
Q  291 atttataacactcacacacattgtgcaccaaccacttttgctagaccctgttggttataaattatggcatatacatttaactttaatcagtataaagtaa 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  46245936 atttataacactcacacacattgtgcaccaaccacttttgctagaccctggtggttacaaattatggcatatacatttaactttaatcagtataacgtaa 46245837  T
Q  391 actaggattatttttcatgatattataattctgcatgcgtgtctgtg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46245836 actaggattatttttcatgatattataattctgcatgcgtgtctgtg 46245790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 91 - 435
Target Start/End: Complemental strand, 46255830 - 46255481
Alignment:
Q  91 agaggtttattgtgtaatgtgcagggttatactgagatcaagaaaagatctcttctctcttcaatggagaactatgttacattacttctcgagaacgaga 190  Q
    ||||||||||  |||||| |||| ||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||   |    
T  46255830 agaggtttatcatgtaatctgcaaggttatactgacatcaaaaaaagatctcttctcacttctatggagaactatgttacattacttctcgagaacagaa 46255731  T
Q  191 aacc-tatctttaccccaacgtaagaactttacaaatgaatttggttacaaactta----ttatgtcagnnnnnnn-atcagtagcagttaaactcagta 284  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||         | |||||| |||| |||||| ||    
T  46255730 aaccatatctttaccccaacgtaagaactttacaaaggaatttggttacaaacttacatattatgtcatttttttttaccagtaggagttgaactcaata 46255631  T
Q  285 tctggaatttataacactcacacacattgtgcaccaaccacttttgctagaccctgttggttataaattatggcatatacatttaactttaatcagtata 384  Q
    |||| |||||| ||||||||||||  ||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||    
T  46255630 tctgaaatttacaacactcacaca--ttgtgcaccaaccacctttgctagaccctggtggttacaaattatggcttatacatttagctttaatcagtata 46255533  T
Q  385 aagt-aaactaggattatttttcatgatattataattctgcatgcgtgtctg 435  Q
    |  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  46255532 acttaaaactaggattatttttcatgatattataattctgcatgcgtgtctg 46255481  T

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