View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_low_5 (Length: 442)
Name: NF20274_low_5
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 12652274 - 12651869
Alignment:
| Q |
18 |
aaaataagcagtcttgaggacagtacaaatgaaagcaacatacccatttaataccaccaattttgtctccaacttcctccgattgaaatcatagatagag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12652274 |
aaaataagcagtcttgaggacagtacaaatgaaagcaacatacccatttaataccaccaattttgtctccaacttcctccgattgaaatcataga----g |
12652179 |
T |
|
| Q |
118 |
gatactccctctaaggatgtctatttgctaaagtcaaatgaagataagtttgttacaaaaaatatctaattgataaagtcaaacgaccccatatcattat |
217 |
Q |
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| | ||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12652178 |
ggt--------taaggatgtgtctttgctaaagtcaaacgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattat |
12652087 |
T |
|
| Q |
218 |
ctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctcctcccaagaagaaggcattacatcaccgttgagtttcctctaagagttact |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12652086 |
ctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctcctcccaagaagaaggcattacatcaccgttgagtttcctccaagagttact |
12651987 |
T |
|
| Q |
318 |
tctcaggctgtatatctcctaataattagggtcatacatatatattggaacaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccag |
417 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12651986 |
tctgaggctgtatatctcccaataattagggtcatacatatatattggcacaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccag |
12651887 |
T |
|
| Q |
418 |
aaagggctattcttctct |
435 |
Q |
| |
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|||||||||||| ||||| |
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| T |
12651886 |
aaagggctattcatctct |
12651869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 27 - 435
Target Start/End: Complemental strand, 12647151 - 12646737
Alignment:
| Q |
27 |
agtcttgaggacagtacaaatgaaagcaacatacccatttaataccaccaattttgtctccaacttcctccgattgaaatcatagatagaggatactccc |
126 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||||| |
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| T |
12647151 |
agtcatgaggacagtacaaatgaaagcaacagacccatttaataccaccaattttttctccaactttctgcgattgaaatcatagatagatgatactccc |
12647052 |
T |
|
| Q |
127 |
tctaaggatgtctatttgctaaagtcaaatgaagataagtttgttacaaaaaatatctaattgataaagtcaaacgaccccatatcattatctaggccca |
226 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
12647051 |
tctaaggatgtctctttgctaaagtcaaatgaaggtaagtttgttacaaaaaatatctcattgataaagtcaaacgaccccatatcattatctaggttca |
12646952 |
T |
|
| Q |
227 |
accaatgacaaaattcattcaagttcacttgacaacgctcctcccaagaagaaggcat---ta---catcaccgttgagtttcctctaagagttacttct |
320 |
Q |
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|||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||| || || |||| | ||||||||| ||||||||||||| |
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| T |
12646951 |
accaatagcaaaattcattcaagttcacctgacaacgctcttcccaagaatcaggcataggtatatcaccaccatcaagtttcctccaagagttacttct |
12646852 |
T |
|
| Q |
321 |
caggctgtatatctcctaataattagggtcatacatatatattggaacaccctcccaaaaatcatcattatcatcaaattccaagtccatctcccagaaa |
420 |
Q |
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|
||||||||||||||| |||||| ||| |||||||||| |||||| || |||| |||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
12646851 |
gaggctgtatatctcccaataatcaggatcatacatatttattggcacccccttccaaaaatcatcatcatcgtcaaaatccaagtccatctcccagaaa |
12646752 |
T |
|
| Q |
421 |
gggctattcttctct |
435 |
Q |
| |
|
||||||||||||||| |
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| T |
12646751 |
gggctattcttctct |
12646737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 12711996 - 12712072
Alignment:
| Q |
178 |
aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcac |
254 |
Q |
| |
|
||||||| ||||||||||||||| ||| | ||||||| | | |||| |||||||| |||||||||||||||||||| |
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| T |
12711996 |
aatatctcattgataaagtcaaatgacacaatatcataagatgggcctaaccaatggcaaaattcattcaagttcac |
12712072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 12516863 - 12516901
Alignment:
| Q |
297 |
gagtttcctctaagagttacttctcaggctgtatatctc |
335 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
12516863 |
gagtttcctccaagagttacttctaaggctgtatatctc |
12516901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 37830714 - 37830624
Alignment:
| Q |
166 |
tttgttacaaaa-aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcact |
255 |
Q |
| |
|
|||||||||||| || |||| |||| |||||||||| ||| ||||||||| | | || |||||||||| || ||||||||||||||||| |
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| T |
37830714 |
tttgttacaaaagaacatctcattgttaaagtcaaatgacaccatatcatatttttggtccaaccaatggcaccattcattcaagttcact |
37830624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 6117736 - 6117660
Alignment:
| Q |
178 |
aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcac |
254 |
Q |
| |
|
||||||| ||||||||||||||| ||| | ||||||| | | |||| ||| ||| |||||||||||||||||||| |
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|
| T |
6117736 |
aatatctcattgataaagtcaaatgacacaatatcatcagatgggcctaacatatggcaaaattcattcaagttcac |
6117660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 22535511 - 22535549
Alignment:
| Q |
298 |
agtttcctctaagagttacttctcaggctgtatatctcc |
336 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||| |
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| T |
22535511 |
agtttcctccaagagttacttctaaggctgtatatctcc |
22535549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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