View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_low_7 (Length: 407)
Name: NF20274_low_7
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 43503566 - 43503185
Alignment:
| Q |
11 |
cagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaat |
110 |
Q |
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| T |
43503566 |
cagagacatttggtgatttgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaat |
43503467 |
T |
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| Q |
111 |
caagctaaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggatt |
210 |
Q |
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| T |
43503466 |
caagctaaacttagagcagaaccctattgaattgccacctatggagattgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggatt |
43503367 |
T |
|
| Q |
211 |
gacatattggcagaggaagagaggaaaaagacacatgaatcggaagaacaaggacagagtggttggctaacacgaagtctctccatgttgaagaacgttc |
310 |
Q |
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| T |
43503366 |
gatatattggcagaggaagagaggaaaaagacacatgaatcggaagaacaaggacagagtggttggctaacaagaagtctctccatgttgaagaacgttc |
43503267 |
T |
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| Q |
311 |
ctggaaatgtaactgagtatatcgaaagtgtcgtctcccccaaaactcccaaaactcccaagactcctagaagtaattttct |
392 |
Q |
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| T |
43503266 |
ctggaaatgtaactgagtatattgaaagtgtcgtctccccaaaaactcccaaaactcccaagactcctagaagtaattttct |
43503185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 34564450 - 34564231
Alignment:
| Q |
11 |
cagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaat |
110 |
Q |
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||||||||||||| || ||| || ||||||||||||||| | || || ||||| |||||||||||||| ||||||||||| ||||||||| ||| | |
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| T |
34564450 |
cagagacatttggcgaattgactaatctcaaggaattggatgtcagtaataatcagattcatgcacttccagatacatttggttgccttgataatttgac |
34564351 |
T |
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| Q |
111 |
caagctaaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggatt |
210 |
Q |
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|||||| ||||| || ||||| ||| ||||| ||||||| |||||| |||||| |||| ||||||||||| || ||| |||||||||||||||||| |
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| T |
34564350 |
caagctcaacttggaacagaatcctcttgaactgccaccagtggagattgtaaaccaaggggtccaagccataaaaacttttatggccaagaggtggatt |
34564251 |
T |
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| Q |
211 |
gacatattggcagaggaaga |
230 |
Q |
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| || |||| ||||||||| |
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| T |
34564250 |
gctatgttggaagaggaaga |
34564231 |
T |
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