View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20274_low_8 (Length: 388)
Name: NF20274_low_8
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20274_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 7228249 - 7228579
Alignment:
| Q |
10 |
attatactggatgaaattgaaagatcgatatgaaatgacatcaatagccaatatggaccgatcatagattataatattttctttgtcgccaaatgtttac |
109 |
Q |
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| T |
7228249 |
attacactggatgaaattgaaagatcgacatgaaatgacatcaatagccaatatggaccgatcatagattataatattttctttgtcacgaaatgtttac |
7228348 |
T |
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| Q |
110 |
acaagttgagttccaggattagaaaa-aactccaagttgaaaccctaaaccctaactcctagttttaataggattcgaaaaaacctcaagtttcgtagag |
208 |
Q |
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| T |
7228349 |
acaagttgagacccaggattagaaaaaaactccaagttgaaaccctaaaccctaactcctagttttaataaaattcgaaagaatctcaaatttcgtagag |
7228448 |
T |
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| Q |
209 |
cgctcaactatatgtattaagtactttgacattgtcccgagcttataactttagttcatcccaacgcatatatacatccaacaatctaaaaatattaaca |
308 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7228449 |
cgcttgactatacatattaagtactttgacattgtaccgagcttataactttagttcatcccaacacatatatacatccaacaatctaaaaatattaaca |
7228548 |
T |
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| Q |
309 |
atcaatgtgagatttcaattaaacttcaata |
339 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
7228549 |
atcaatgtgagacttcaattaaacttcaata |
7228579 |
T |
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