View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20274_low_9 (Length: 377)

Name: NF20274_low_9
Description: NF20274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20274_low_9
NF20274_low_9
[»] chr8 (5 HSPs)
chr8 (22-87)||(38452874-38452939)
chr8 (156-202)||(38452740-38452786)
chr8 (264-319)||(7200994-7201049)
chr8 (206-249)||(38452708-38452750)
chr8 (265-321)||(1679657-1679713)
[»] chr2 (1 HSPs)
chr2 (272-360)||(846307-846395)
[»] chr4 (2 HSPs)
chr4 (156-250)||(44475662-44475744)
chr4 (267-326)||(22866860-22866919)
[»] chr6 (1 HSPs)
chr6 (280-323)||(24971128-24971171)
[»] chr7 (1 HSPs)
chr7 (280-326)||(37615404-37615450)
[»] scaffold0199 (1 HSPs)
scaffold0199 (265-321)||(4894-4950)
[»] chr3 (1 HSPs)
chr3 (253-361)||(38119766-38119874)


Alignment Details
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 38452939 - 38452874
Alignment:
Q  22 catgaattccgcaagaaaatctgaagggattcagtttttccactcatcattgatgagtgtaatcca 87  Q
    |||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||    
T  38452939 catgaattccacaagaaaatccaaaggggttcagtttttccactcatcattgatgagcgtaatcca 38452874  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 38452786 - 38452740
Alignment:
Q  156 cttattcaggatgattagagatagataaaacataaatatgaataatt 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38452786 cttattcaggatgattagagatagataaaacagaaatatgaataatt 38452740  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 7201049 - 7200994
Alignment:
Q  264 cccaagtcccacattcagtagaatgagatgcttggtggagtgtttaagtggtttgg 319  Q
    |||||||| |||||| ||||| ||||||||||||||||||| ||||||||| ||||    
T  7201049 cccaagtctcacattgagtagtatgagatgcttggtggagtatttaagtggcttgg 7200994  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 38452750 - 38452708
Alignment:
Q  206 tatgaataattaaataggaagaaagaatgtgataagggactcga 249  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  38452750 tatgaataattaaataggaagaaagaacgtgat-agggactcga 38452708  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 1679713 - 1679657
Alignment:
Q  265 ccaagtcccacattcagtagaatgagatgcttggtggagtgtttaagtggtttggtt 321  Q
    |||||||||| ||  ||||| ||  ||||||||||||||||||||||||| ||||||    
T  1679713 ccaagtcccatatcaagtagtatcggatgcttggtggagtgtttaagtggcttggtt 1679657  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 846395 - 846307
Alignment:
Q  272 ccacattcagtagaatgagatgcttggtggagtgtttaagtggtttggttcttccttttcggtagctagcttttaaaggagggttcctc 360  Q
    ||||||| ||||| |||||||||| |||||||| ||||||||| ||||||||||| ||| |  ||||| ||||||| ||||| ||||||    
T  846395 ccacattgagtagtatgagatgctcggtggagtatttaagtggcttggttcttcccttttgacagctaacttttaagggaggattcctc 846307  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 44475662 - 44475744
Alignment:
Q  156 cttattcaggatgattagagatagataaaacataaatatgaataattttttatgaataattaaataggaagaaagaatgtgataagggactcgag 250  Q
    |||||||||||||||||||||||||||||||||||       ||| |    |||||||||||||||||||||||||||||||  |||||||||||    
T  44475662 cttattcaggatgattagagatagataaaacataa-------taaat----atgaataattaaataggaagaaagaatgtga-cagggactcgag 44475744  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 22866860 - 22866919
Alignment:
Q  267 aagtcccacattcagtagaatgagatgcttggtggagtgtttaagtggtttggttcttcc 326  Q
    |||| ||| ||| |||||||||  |||||||||||||| |||||||||||||| ||||||    
T  22866860 aagttccatattgagtagaatggaatgcttggtggagtatttaagtggtttgggtcttcc 22866919  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 24971171 - 24971128
Alignment:
Q  280 agtagaatgagatgcttggtggagtgtttaagtggtttggttct 323  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||    
T  24971171 agtagtatgggatgcttggtggagtatttaagtggtttggttct 24971128  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 37615450 - 37615404
Alignment:
Q  280 agtagaatgagatgcttggtggagtgtttaagtggtttggttcttcc 326  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  37615450 agtagtatgagatgctcggtggagtatttaagtggcttggttcttcc 37615404  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 4950 - 4894
Alignment:
Q  265 ccaagtcccacattcagtagaatgagatgcttggtggagtgtttaagtggtttggtt 321  Q
    |||||||||| ||  ||||| ||  ||||||||||||||||||||||||| ||||||    
T  4950 ccaagtcccatatcaagtagtatcggatgcttggtggagtgtttaagtggcttggtt 4894  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 38119874 - 38119766
Alignment:
Q  253 ttatggggtgccccaagtcccacattcagtagaatgagatgcttggtggagtgtttaagtggtttggttcttccttttcggtagctagcttttaaaggag 352  Q
    ||||||||||| |  ||||||| ||   |||| ||| ||| |||||| || | ||||||| |  ||||||||||| |||| ||||| |||||||| ||||    
T  38119874 ttatggggtgctcagagtcccaaatggtgtagtatgggatacttggtagaatatttaagtagcctggttcttcctcttcgatagcttgcttttaagggag 38119775  T
Q  353 ggttcctca 361  Q
    |||||||||    
T  38119774 ggttcctca 38119766  T

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