View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20275_high_18 (Length: 306)
Name: NF20275_high_18
Description: NF20275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20275_high_18 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 102975 - 103203
Alignment:
| Q |
28 |
ctactgagctcgacctctatttacctgttgggtaannnnnnnn---agttttctgttacacagggagaatggaatgtaagcattacttgaatgtcgacaa |
124 |
Q |
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| T |
102975 |
ctactgagctcggcctctatttacctgttgggtaatttttttttttagttttctgttacacagggagaatggaaagtaagcattacttgaatgtcgacaa |
103074 |
T |
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| Q |
125 |
ttctttcagcaagtgtgagtgtacgggaaatcatcttagagagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtc |
224 |
Q |
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| T |
103075 |
tcctttcagcaagtgtgcgtgtaagggaaatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtc |
103174 |
T |
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| Q |
225 |
gaagagtgtaaagtggagcatattccaca |
253 |
Q |
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| T |
103175 |
gaagagtgtaaagtggagcatattccaca |
103203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 32572 - 32361
Alignment:
| Q |
28 |
ctactgagctcgacctctatttacctgttgggtaannnnnnnn-agttttctgttacacagggagaatggaatgtaagcattacttgaatgtcgacaatt |
126 |
Q |
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| T |
32572 |
ctactgagctcggcctctatttacctgttgggtaatttttttttagttttctgttacacagggagaatggaaagtaagcattacttgtatgtcgacaatc |
32473 |
T |
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| Q |
127 |
ctttcagcaagtgtgagtgtacgggaaatcatcttagagagattgaagttgaacaagagtgtaaagttagggtcctgtctcggttttttcataaagtcga |
226 |
Q |
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| T |
32472 |
ctttcaa---------------gggaaatcatcttagaaagattgaagttgaacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtcga |
32388 |
T |
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| Q |
227 |
agagtgtaaagtggagcatattccaca |
253 |
Q |
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| T |
32387 |
agagtgtaaagtggagcatattccaca |
32361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 10427125 - 10426956
Alignment:
| Q |
80 |
ttacacagggagaatggaatgtaagcattacttgaatgtcgacaattctttcagcaagtgtgagtgtacgggaaatcatcttagagagattgaagttgaa |
179 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| || ||||| |||||||||||||||| |||||||||||||| |
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| T |
10427125 |
ttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttcagcaagtatgtgtgtaagggaaatcatcttagaaagattgaagttgaa |
10427026 |
T |
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| Q |
180 |
caagagtgtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattc |
249 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
10427025 |
caagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaagagtgtaaagtggagcatattc |
10426956 |
T |
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