View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20275_high_7 (Length: 338)
Name: NF20275_high_7
Description: NF20275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20275_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 11119872 - 11119549
Alignment:
| Q |
14 |
agggcaagactaagacttctggtcattctttgaggctcgtgacatcatgaagaaaatggatgatacttttgatgaagggttagtaaggttatggtggaaa |
113 |
Q |
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| T |
11119872 |
agggcaagactaagacttctggtcattctttgaggctcgtgacatcatgaaggaaatggatgatacttttgatgaagggttagtaaggttatggtggaaa |
11119773 |
T |
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| Q |
114 |
catgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttg |
213 |
Q |
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| T |
11119772 |
catgagagtggttcattggatgaagacctcaagccattcagtaatgatactgatgcaactgcaatgtctaattatgctcgtgataagaagtgtgatgttg |
11119673 |
T |
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| Q |
214 |
aattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttga |
313 |
Q |
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| T |
11119672 |
aattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtagtggcggatgaagttga |
11119573 |
T |
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| Q |
314 |
aggcaatgttggtgaagcagacaa |
337 |
Q |
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| T |
11119572 |
aggcaatgttggtgaagcagacaa |
11119549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 32 - 336
Target Start/End: Complemental strand, 12206351 - 12206059
Alignment:
| Q |
32 |
ctggtcattctttgaggctcgtgacatcatgaagaaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattg |
131 |
Q |
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| T |
12206351 |
ctggtcattctttaaggctcgtgacatcatgaaggaaattgatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattg |
12206252 |
T |
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| Q |
132 |
gatgaagaccttaagccattcaggaatgatactgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaaccta |
231 |
Q |
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| T |
12206251 |
gatgaagacgtcaagccaatcaggaatgatactgatgcaaccttaatgtctgattatgctcgtgataagaactgtgatgt------------tgaaccta |
12206164 |
T |
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| Q |
232 |
aggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagc |
331 |
Q |
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| T |
12206163 |
aggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagc |
12206064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 32741560 - 32741254
Alignment:
| Q |
30 |
ttctggtcattctttgaggctcgtgacatcatgaagaaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcat |
129 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |
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| T |
32741560 |
ttctggtcattcttcgaggctcgtgacatcatgaaggaaatggatgatacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcat |
32741461 |
T |
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| Q |
130 |
tggatgaagaccttaagccattcaggaatgatactgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacc |
229 |
Q |
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| T |
32741460 |
tggatgaagacctcaagccattcaggaatgatactgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacc |
32741361 |
T |
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| Q |
230 |
taaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaa |
329 |
Q |
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| T |
32741360 |
taaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaa |
32741261 |
T |
|
| Q |
330 |
gcagaca |
336 |
Q |
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| ||||| |
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| T |
32741260 |
gtagaca |
32741254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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