View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20275_low_1 (Length: 598)
Name: NF20275_low_1
Description: NF20275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20275_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 29110406 - 29109967
Alignment:
| Q |
1 |
taactaggcaattgaggtgttttcctgcaagttacccaaaaagttcttcaccaaatgatcatgatgatttctatgagaccgccacaagttgcatcgccat |
100 |
Q |
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| T |
29110406 |
taactaggcaattgaggtgttttcctgcaagttacccaaaaagttcttcaccaaatgatcatgatgatttctatgagaccgccacaagttgcatcgccat |
29110307 |
T |
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| Q |
101 |
gaatgtatgagtgagttatttgtgttaactttaaagaactcaggaggaaactttatccaatgagtatttcatctaaatgcattctcatgatattgagatg |
200 |
Q |
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| T |
29110306 |
gaatgtatgaatgagttatttgtgttaactttaaagaactcaggaggaaactttatccaatgagtatttcatctaaatgcattctcatgatattgagatg |
29110207 |
T |
|
| Q |
201 |
caagagggcaaattatctttttctctatctggtaaaccatgttaactaccttagaagcaatttgcttaccaagttttgtctctttggcgaagacaagatt |
300 |
Q |
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| T |
29110206 |
caagagggcaaattatctttttctctatttggtaaaccatgttaactaccttagaagtaatgtgcttaccaagttttgtctctatagcgaagacaagatt |
29110107 |
T |
|
| Q |
301 |
atttgcgatctttctgaccaattcaaaccgaaactccaa-aaaacataggccatttggcattgctaactccaatgtttttgttgtgatatttcattcaag |
399 |
Q |
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| T |
29110106 |
atttgcgatctttctgaccaatccaaaccgaaactccaaaaaaacataggccatttggcattgctaactccaatgtttttgttgtgatatttcattcaag |
29110007 |
T |
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| Q |
400 |
tcaagcatgcaaacagtggccgggggactaggggccttta |
439 |
Q |
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| T |
29110006 |
tcaagcatgcaaacagtggccgggggactaggggccttta |
29109967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 437 - 582
Target Start/End: Complemental strand, 29109235 - 29109090
Alignment:
| Q |
437 |
ttagaggccaattcatccacatccataaccttatcattaaaattctggtcattcctcgcattctaaatcacccaatttatagcatgctacattagccaaa |
536 |
Q |
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| T |
29109235 |
ttagaggccaattcatccacatccataaccttattattaaaattctggtcattccttgcattctaaatcacccaatttatagcatgctacactagccaaa |
29109136 |
T |
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| Q |
537 |
tgccgcggcggagcctctttgaacccaccgcatttgtccaaacatt |
582 |
Q |
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| T |
29109135 |
cgccgcggcaaagcctctttgaacccaccgcatttgtccaaacatt |
29109090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 42439352 - 42439295
Alignment:
| Q |
118 |
atttgtgttaactttaaagaactcaggaggaaactttatccaatgagtatttcatcta |
175 |
Q |
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||||||||||||||| | || ||||||||| |||||||| |||| |||||||||||| |
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| T |
42439352 |
atttgtgttaacttttacaaagtcaggaggagactttatctaatgtgtatttcatcta |
42439295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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