View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20275_low_2 (Length: 483)
Name: NF20275_low_2
Description: NF20275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20275_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 19582357 - 19582845
Alignment:
| Q |
1 |
catgcatggagattaattaaactttaactatcaccataatttcatttcaataacatgaaattaaattctcttcattaacattctgaaattaatttaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |
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| T |
19582357 |
catgcatggagattaattaaactttaactatcaccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaactt |
19582456 |
T |
|
| Q |
101 |
gatcaatatataaatcagaaattagccacaattaagcatcccttaattaaagaattcatcaagaatgttctgc------------------aaacaacta |
182 |
Q |
| |
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||||||||||||||||||||| |||| || ||| |||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
19582457 |
gatcaatatataaatcagaaa---gccaaaacaaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactacta |
19582553 |
T |
|
| Q |
183 |
accggactcagaggtggtatttgcatctatcatggtgacggagtaacagagggattattacttgctgatgattctaatgtatccggtggagatcccgatg |
282 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582554 |
accggactcggaggtggtatttgcatctgtcatggtgacggagtaacagagggattattacttgctgatgattctaatgtatccggtggagatcccgatg |
19582653 |
T |
|
| Q |
283 |
agacgggtgaagggtctgatgacgcgacgggtgaagggtctgaggagttcaatgaattgtctgatgagaccggtagaggatctgatgagctcgatgaaac |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
19582654 |
agacgggtgaagggtctgatgacgcgacgggtgaagggtctgaggagttcaatgaattgtctgatgagaccggtaaagggtctgatgagctcgatgaaat |
19582753 |
T |
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| Q |
383 |
gtatgcggcggtgatgctgatgatttgtccttgtgactgtgaacttcctggcggtggttcttggattgaaagatgtcgctttggtgatgatg |
474 |
Q |
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| T |
19582754 |
gtatgcggcggtgatgctgatgatttgtccttgtgactgtgaacttcctggcggtggttcttggattgaaagatgtcgctttggtgatgatg |
19582845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 19591228 - 19590740
Alignment:
| Q |
1 |
catgcatggagattaattaaactttaactatcaccataatttcatttcaataacatgaaattaaattctcttcattaacattctgaaattaatttaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |
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| T |
19591228 |
catgcatggagattaattaaactttaactatcaccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaactt |
19591129 |
T |
|
| Q |
101 |
gatcaatatataaatcagaaattagccacaattaagcatcccttaattaaagaattcatcaagaatgttctgc------------------aaacaacta |
182 |
Q |
| |
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||||||||||||||||||||| |||| || ||| |||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
19591128 |
gatcaatatataaatcagaaa---gccaaaacaaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactacta |
19591032 |
T |
|
| Q |
183 |
accggactcagaggtggtatttgcatctatcatggtgacggagtaacagagggattattacttgctgatgattctaatgtatccggtggagatcccgatg |
282 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19591031 |
accggactcggaggtggtatttgcatctgtcatggtgacggagtaacagagggattattacttgctgatgattctaatgtatccggtggagatcccgatg |
19590932 |
T |
|
| Q |
283 |
agacgggtgaagggtctgatgacgcgacgggtgaagggtctgaggagttcaatgaattgtctgatgagaccggtagaggatctgatgagctcgatgaaac |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
19590931 |
agacgggtgaagggtctgatgacgcgacgggtgaagggtctgaggagttcaatgaattgtctgatgagaccggtaaagggtctgatgagctcgatgaaat |
19590832 |
T |
|
| Q |
383 |
gtatgcggcggtgatgctgatgatttgtccttgtgactgtgaacttcctggcggtggttcttggattgaaagatgtcgctttggtgatgatg |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19590831 |
gtatgcggcggtgatgctgatgatttgtccttgtgactgtgaacttcctggcggtggttcttggattgaaagatgtcgctttggtgatgatg |
19590740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 19587076 - 19586919
Alignment:
| Q |
1 |
catgcatggagattaattaaactttaactatcaccataatttcatttcaataacatgaaattaaattctcttcattaacattctgaaattaatttaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
19587076 |
catgcatggagattaattaaactttaactatcaccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaactt |
19586988 |
T |
|
| Q |
101 |
gatcaatatataaatcagaaattagccacaattaagcatcccttaattaaagaattcatcaagaatgttctg |
172 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
19586987 |
gatcaatatataaatcagaa---agccagaattaagtatcccttaattaaagaattcatgaagaatgttctg |
19586919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 19586883 - 19586794
Alignment:
| Q |
214 |
atggtgacggagtaacagagggattattacttgctgatgattctaatgtatccggtggagatcccgatgagacgggtgaagggtctgatg |
303 |
Q |
| |
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|||||||||||| || ||| |||||||| |||| | |||||||||| |||||||||||| || ||||||||||||||||| ||||||| |
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| T |
19586883 |
atggtgacggaggaatagaaggattatttgttgcggttgattctaataaatccggtggagagcctgatgagacgggtgaaggttctgatg |
19586794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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