View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20276_high_1 (Length: 824)
Name: NF20276_high_1
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20276_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 735; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 11 - 806
Target Start/End: Original strand, 595442 - 596237
Alignment:
| Q |
11 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
595442 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaatt |
595541 |
T |
|
| Q |
111 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595542 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
595641 |
T |
|
| Q |
211 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595642 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
595741 |
T |
|
| Q |
311 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttacannnnnnnggtaaacaaatctcattctttatgattagtcaaagaaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595742 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaa |
595841 |
T |
|
| Q |
411 |
agatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggnnnnnnnnaatcgatattcaaatggatgcttataacaaca |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
595842 |
agatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggttttttttaatcgatattcaaatggatgcttataacaaca |
595941 |
T |
|
| Q |
511 |
aatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagaggatcacaatgaaaatgttatacaccattc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
595942 |
aatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagaggatcacaatgaaaatgttatacaccattc |
596041 |
T |
|
| Q |
611 |
ccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
596042 |
ccttgcagccattttgaagtgttttatgcaaccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattt |
596141 |
T |
|
| Q |
711 |
tccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
806 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
596142 |
tccaatcgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
596237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 23962413 - 23962328
Alignment:
| Q |
262 |
ttaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgttcaatatcaatcaaatctt |
347 |
Q |
| |
|
||||||||||| |||| ||||||| ||| |||||| |||||| ||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
23962413 |
ttaaaggtatgtcattgtcttttcgtgcggtgttggaaacttcttcgaaggtagtagcttttgatgttcaatatcaatcaagtctt |
23962328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 372 - 806
Target Start/End: Original strand, 17373398 - 17373835
Alignment:
| Q |
372 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggn |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
17373398 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaagcatttcaagtagacaaatggaggt |
17373497 |
T |
|
| Q |
472 |
nnnnnnnaatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttg |
571 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
17373498 |
tttttttaatcgatattcaaatggatgcttatagcaacaaatgattgtaaaattcatattcatggtagttattatatgatgaataatttaaataaactcg |
17373597 |
T |
|
| Q |
572 |
ttgaaaagaggatcacaatgaaaatgtta---tacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggac |
668 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373598 |
ttgaaaagaggatcacaatgaaaatgttactatacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggac |
17373697 |
T |
|
| Q |
669 |
gacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacg |
768 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373698 |
gacacttatcaccgttcaaacatcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacg |
17373797 |
T |
|
| Q |
769 |
atgggggttaccaagccatgtaaaactgcaggagaata |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17373798 |
atgggggttaccaagccatgtaaaactgcaggagaata |
17373835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 484 - 592
Target Start/End: Complemental strand, 33006051 - 33005946
Alignment:
| Q |
484 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagagga |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
33006051 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcat---catggtagttattatatgatgaataattaaaataaacttgttgaaaagagga |
33005955 |
T |
|
| Q |
584 |
tcacaatga |
592 |
Q |
| |
|
||||||||| |
|
|
| T |
33005954 |
tcacaatga |
33005946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 479 - 592
Target Start/End: Complemental strand, 7632928 - 7632818
Alignment:
| Q |
479 |
aatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaa |
578 |
Q |
| |
|
||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
7632928 |
aatcgattttcaaatggttgcttatgacaa---atgattgtaaaattcatattcatggtggttattttatgatgaataattgaaataaacttgttgaaaa |
7632832 |
T |
|
| Q |
579 |
gaggatcacaatga |
592 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7632831 |
gaggatcacaatga |
7632818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
121 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
212 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||| |||||||||| |||| |||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 33006205 - 33006147
Alignment:
| Q |
375 |
aaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
434 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33006205 |
aaacaaatctcatt-tttatgattagtcaaagaaaaagatctcgttctttatgatattaa |
33006147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
118 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
209 |
Q |
| |
|
||||||||||||||||||| || | |||||| || |||||||||| |||| ||||| ||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 7633083 - 7633021
Alignment:
| Q |
372 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
434 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||| |||| |||| ||||||||||||||||| |
|
|
| T |
7633083 |
ggtaaacaaatcccatactttatgattagtaaaaataaaaaatctcgttctttatgatattaa |
7633021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 623 - 806
Target Start/End: Complemental strand, 6608887 - 6608704
Alignment:
| Q |
623 |
tttgaagtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaat |
722 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||| |||||| | | ||||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
6608887 |
tttgaagtgttgtacgcatccattaattggatacttttccaaggaacacacttttgatcgttcaaacagcctccatttacgtttattccccatgtgcaat |
6608788 |
T |
|
| Q |
723 |
ggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
806 |
Q |
| |
|
| ||| ||| ||| ||||||||||||||||| ||||| | ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
6608787 |
gattgcaattgtgacggttttggtcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggagaata |
6608704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 745 - 806
Target Start/End: Complemental strand, 6613356 - 6613295
Alignment:
| Q |
745 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
806 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
6613356 |
gtcgtaaatgtcaagataatgtcgatgcgggtttccaggccatgtaaaactgcagaagaata |
6613295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 806
Target Start/End: Original strand, 9145868 - 9145929
Alignment:
| Q |
745 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
806 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |||||| |
|
|
| T |
9145868 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaata |
9145929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 745 - 806
Target Start/End: Complemental strand, 9180564 - 9180503
Alignment:
| Q |
745 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaata |
806 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |||||| |
|
|
| T |
9180564 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaata |
9180503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 742 - 794
Target Start/End: Original strand, 22823229 - 22823281
Alignment:
| Q |
742 |
ttggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaac |
794 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||| |
|
|
| T |
22823229 |
ttggtcgtaaatgtcaagataatgtcgatgtgggtttccaggccatgtaaaac |
22823281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 508 - 592
Target Start/End: Original strand, 15290410 - 15290496
Alignment:
| Q |
508 |
acaaatgattgtaaaattcatattcatggtagttattat--atgataaataatttaaataaacttgttgaaaagaggatcacaatga |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15290410 |
acaaatgattgtaaaattcatattcatggtagtttttttttatgatgaataattgaaataaacttgttgaaaagaggatcacaatga |
15290496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 577
Target Start/End: Complemental strand, 26588056 - 26587991
Alignment:
| Q |
512 |
atgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaa |
577 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | || ||||||| | ||||||||||||||| |
|
|
| T |
26588056 |
atgattgtaaaattcatatacaaagtagttattatttcatgaataattgacataaacttgttgaaa |
26587991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 15290245 - 15290303
Alignment:
| Q |
376 |
aacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
434 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||| || ||||||||||||||||| |
|
|
| T |
15290245 |
aacaaatctcattctttatcattagtaaaaaaaaaaatactcgttctttatgatattaa |
15290303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University