View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20276_high_5 (Length: 349)

Name: NF20276_high_5
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20276_high_5
NF20276_high_5
[»] chr2 (5 HSPs)
chr2 (134-337)||(43472326-43472526)
chr2 (250-342)||(43483510-43483601)
chr2 (19-82)||(24745725-24745788)
chr2 (19-83)||(41828078-41828140)
chr2 (43-83)||(24745879-24745919)
[»] chr3 (6 HSPs)
chr3 (19-83)||(22524031-22524095)
chr3 (23-83)||(13595265-13595325)
chr3 (19-83)||(22461016-22461080)
chr3 (19-74)||(41537583-41537638)
chr3 (19-83)||(50151793-50151857)
chr3 (23-83)||(25095755-25095813)
[»] chr4 (3 HSPs)
chr4 (19-86)||(30680831-30680898)
chr4 (19-85)||(43413384-43413450)
chr4 (23-85)||(50391978-50392040)
[»] chr7 (4 HSPs)
chr7 (19-84)||(1705912-1705977)
chr7 (23-85)||(40745970-40746032)
chr7 (32-85)||(38821419-38821472)
chr7 (23-83)||(42310366-42310426)
[»] chr8 (2 HSPs)
chr8 (19-84)||(14507381-14507446)
chr8 (19-82)||(10475235-10475298)
[»] chr1 (5 HSPs)
chr1 (31-84)||(8622365-8622418)
chr1 (19-83)||(11827895-11827959)
chr1 (19-83)||(27581568-27581632)
chr1 (19-71)||(1749998-1750050)
chr1 (43-83)||(27666461-27666501)
[»] chr5 (1 HSPs)
chr5 (31-83)||(2825745-2825797)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 134 - 337
Target Start/End: Original strand, 43472326 - 43472526
Alignment:
Q  134 tatacctacgataccgatatcccaccaaacttaagtatctnnnnnnnntatagaatggatttacaaatgtgtgtagcccatagtgtcaaaaataaaaagc 233  Q
    |||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  43472326 tatacctatgataccgatatcccaccaaacttaagtatctaaaaaaaatatagaatggatttacaaatgtg--tagcccatagtgtcaaaaataaaaagc 43472423  T
Q  234 aaacaatggtgagaataagttccaaaaactacagatgtctcccaattaatctctcacaaatccttaattttgtacttgcaagtttcaaccaaacacttca 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43472424 aaacaatggtgagaataagttccaaaaactacagatgtctcccaattaatctctcacaaatccttaa-tttgtacttgcaagtttcaaccaaacacttca 43472522  T
Q  334 ccta 337  Q
    ||||    
T  43472523 ccta 43472526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 43483510 - 43483601
Alignment:
Q  250 aagttccaaaaactacagatgtctcccaattaatctctcacaaatccttaattttgtacttgcaagtttcaaccaaacacttcacctatgctt 342  Q
    ||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  43483510 aagttacacaaactacagatgtctcccaattaatctctcacagatccttaa-tttgtactttcaagtttcaaccaaacacttcacctaagctt 43483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 24745788 - 24745725
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttct 82  Q
    ||||||| ||| ||||||| |||||||||||||||||| | | |||||||||||||||||||||    
T  24745788 tttcttggttttgtgtgtgtgcctaaaattgaagtgtttggtatgtgcccaaccaagactttct 24745725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 41828078 - 41828140
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||||||| |||||||  |  |||||||||||||||| |||||| ||||| |||||||||||    
T  41828078 tttcttgcttttgtgtgtgtcc--aaaattgaagtgttaggtttgtgtccaacgaagactttctc 41828140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 24745879 - 24745919
Alignment:
Q  43 aaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  24745879 aaaattgaagtgttgggtatgtgcccaaccaagactttctc 24745919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 22524095 - 22524031
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  22524095 tttcttgcttttgtgtgtgcgcccaaaattgaagtgttaggtttgtgcccaaccaagactttctc 22524031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 13595325 - 13595265
Alignment:
Q  23 ttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||    
T  13595325 ttgcttttgtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctc 13595265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 22461080 - 22461016
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||||||| ||||||| ||  |||||||||||||||| ||||||||||||||| ||||||||    
T  22461080 tttcttgcttttgtgtgtgtgctcaaaattgaagtgttaggtttgtgcccaaccaaaactttctc 22461016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 41537583 - 41537638
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaa 74  Q
    ||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||    
T  41537583 tttcttgcttttgtgtgtgtgcctaaaattgaagtgttaggtttgtacccaaccaa 41537638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 50151793 - 50151857
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||| ||| |||| || |||||||||||||||||| ||| |||| |||||||||||||||||    
T  50151793 tttcttggttttgtgtatgtgcctaaaattgaagtgttggatatgtgtccaaccaagactttctc 50151857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 25095755 - 25095813
Alignment:
Q  23 ttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||| |||||||| |  |||||||||||||||| ||||| ||||||||||| ||||||    
T  25095755 ttgcttttgtgtgtgcac--aaaattgaagtgttaggtttgtacccaaccaagattttctc 25095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 30680831 - 30680898
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcctt 86  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||    
T  30680831 tttcttgcttttgtgtgtgtgcccaaaattgaggtgttagatttgtgcccaaccaagactttctcctt 30680898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 43413384 - 43413450
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcct 85  Q
    ||||||||||| ||||||  ||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  43413384 tttcttgcttttgtgtgtatgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctcct 43413450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 50392040 - 50391978
Alignment:
Q  23 ttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcct 85  Q
    ||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  50392040 ttgcttttgtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctcct 50391978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 1705912 - 1705977
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcc 84  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||    
T  1705912 tttcttgcttttgtgtgtgtgcccaaaattgaagtgttaggtttgtgcccaaccaagactttctcc 1705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 40745970 - 40746032
Alignment:
Q  23 ttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcct 85  Q
    ||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  40745970 ttgcttttgtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctcct 40746032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 38821419 - 38821472
Alignment:
Q  32 tgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcct 85  Q
    |||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  38821419 tgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctcct 38821472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 42310366 - 42310426
Alignment:
Q  23 ttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||| |||| || |||||||||||| ||||||| ||| || |||||||||||||||||    
T  42310366 ttgcttttgtgtatgtgcctaaaattgaggtgttaggtttctgtccaaccaagactttctc 42310426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 14507446 - 14507381
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcc 84  Q
    ||||||||||| ||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||    
T  14507446 tttcttgcttttgtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctcc 14507381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 10475298 - 10475235
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttct 82  Q
    |||||||||||  |||||| ||| |||||| ||||||||| |||||| ||||||||||||||||    
T  10475298 tttcttgcttttctgtgtgtgcccaaaattaaagtgttaggtttgtgtccaaccaagactttct 10475235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 8622365 - 8622418
Alignment:
Q  31 gtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctcc 84  Q
    ||||||| |||||||||||||||||| | | |||||||||||||||||||||||    
T  8622365 gtgtgtgtgcctaaaattgaagtgttgggtatgtgcccaaccaagactttctcc 8622418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 11827959 - 11827895
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||||||| ||||||| ||| || |||||||||||| |||||||||| ||||| ||||||||    
T  11827959 tttcttgcttttgtgtgtgtgcccaatattgaagtgttaaatttgtgccctaccaaaactttctc 11827895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 27581632 - 27581568
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||||||| ||||||| | | |||||| ||||||||| |||||||||||| || ||||||||    
T  27581632 tttcttgcttttgtgtgtgtgtccaaaattaaagtgttaggtttgtgcccaacgaaaactttctc 27581568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 1750050 - 1749998
Alignment:
Q  19 tttcttgctttcgtgtgtgcgcctaaaattgaagtgttagatttgtgcccaac 71  Q
    ||||||| ||| ||| |||||||||||||||||||||| | | ||||||||||    
T  1750050 tttcttggttttgtgcgtgcgcctaaaattgaagtgttgggtatgtgcccaac 1749998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 27666461 - 27666501
Alignment:
Q  43 aaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    |||||||||||||| ||| ||||||||||||| ||||||||    
T  27666461 aaaattgaagtgttggatatgtgcccaaccaaaactttctc 27666501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 2825797 - 2825745
Alignment:
Q  31 gtgtgtgcgcctaaaattgaagtgttagatttgtgcccaaccaagactttctc 83  Q
    ||||||| | |||||||||||||||| | | |||| |||||||||||||||||    
T  2825797 gtgtgtgtgtctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 2825745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University