View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20276_high_6 (Length: 288)
Name: NF20276_high_6
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20276_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 33887111 - 33887374
Alignment:
| Q |
1 |
agtgatgatatagacctataaacaaatttgtaatctaaatatagnnnnnnnnnccttatcctattcgggttttttcagctagttattttgtggaaattta |
100 |
Q |
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| T |
33887111 |
agtgatgatatagacctataaacaaatttgtaatctaaatata-attttttttccttatcctattcgggttttttcagctagttattttgtgaaaattt- |
33887208 |
T |
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| Q |
101 |
tttatctttaaatagttaatatgataattgactctatccttattctttaattagtcattttgaactaaataaaaacttatctcatccacgtcattaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887209 |
---atctttaaatagttaatatgataattgactctatccttattctttaattagtcattttgaactaaataaaaacttatctcatccacgtcattaatgt |
33887305 |
T |
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| Q |
201 |
gcgtgtaacaatcatctttgtgacctataaatagaggccataacttaccagtacttgagagacaccttcatt |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33887306 |
gcgtgtaaaaatcatctttgtgacctataaatagaggccataacttacc---acttgagagacaccttcatt |
33887374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 33892281 - 33892313
Alignment:
| Q |
176 |
cttatctcatccacgtcattaatgtgcgtgtaa |
208 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
33892281 |
cttatctcatccacgtaattaatgtgcgtgtaa |
33892313 |
T |
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