View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20276_low_10 (Length: 235)
Name: NF20276_low_10
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20276_low_10 |
 | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 2631289 - 2631496
Alignment:
| Q |
13 |
ctctccaactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggattctagagttgctttaaaaaattatttatgtctcataaacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631289 |
ctctccaactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggattctagagttgctttaaaaaattatttatgtctcataaacc |
2631388 |
T |
|
| Q |
113 |
catgttatttttccttgcggaaccatgattacgtttgtgcaagttccttcttggtaatggcaaagtattggggtgacgagatattgtattaatgataaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631389 |
catgttatttttccttgcggaaccatgattacgtttgtgcaagttccttcttggtaatggcaaagtattggggtgacgagatattgtattaatgataaag |
2631488 |
T |
|
| Q |
213 |
gtcctttg |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
2631489 |
gtcctttg |
2631496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6040 - 6116
Alignment:
| Q |
18 |
caactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggattctagagttgctttaaaaaatt |
94 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6040 |
caactgctcaataaatattttttattggaatgtgcgaggtattggtaactcggattctagagttgctttaaataatt |
6116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 5569709 - 5569635
Alignment:
| Q |
13 |
ctctccaactgcccaatgaatattttttattggaatgtgtggggtattggtaactcggattctagagttgctttaaa |
89 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
5569709 |
ctctccaactgctcaatgaat--tttttattggaatgtgtgaggtattagtaactcggattctagaattgctttaaa |
5569635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 21460564 - 21460652
Alignment:
| Q |
24 |
cccaatgaatattttttattggaatgtgtggggtattggtaactcggattctagagttgctttaaaaaattatttatgtctcataaacc |
112 |
Q |
| |
|
|||||||||| || | ||||||||||| | ||||||||||| || ||| || | |||||||||||| |||||| |||| |||||||| |
|
|
| T |
21460564 |
cccaatgaatgttctctattggaatgttcgcggtattggtaattccgatactcggcttgctttaaaaatttatttttgtcgcataaacc |
21460652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 25219302 - 25219425
Alignment:
| Q |
87 |
aaaaaattatttatgtctcataaacccatgttatttttccttgcggaacc-atgattacgtttgtgcaagttccttcttggtaatggcaaagtattgggg |
185 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| |||| ||||||| || |||||| | |||| || |||||||||||||| ||| |||||||| ||| |
|
|
| T |
25219302 |
aaaaaattatttttgtcacataaaccgttgttagtttttattgcggagccgatgatttcttttgagctcgttccttcttggtattggaaaagtattaggg |
25219401 |
T |
|
| Q |
186 |
tgacgagatattgtattaatgata |
209 |
Q |
| |
|
|| ||| ||||||||| ||||||| |
|
|
| T |
25219402 |
tgtcgaaatattgtataaatgata |
25219425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University