View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20276_low_2 (Length: 639)

Name: NF20276_low_2
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20276_low_2
NF20276_low_2
[»] chr3 (6 HSPs)
chr3 (274-624)||(14783044-14783394)
chr3 (26-224)||(14782856-14783044)
chr3 (24-75)||(34986743-34986794)
chr3 (26-68)||(9198640-9198682)
chr3 (24-63)||(18268013-18268052)
chr3 (24-80)||(47542530-47542586)
[»] chr8 (8 HSPs)
chr8 (24-76)||(18212328-18212380)
chr8 (24-76)||(20154083-20154135)
chr8 (24-76)||(20203335-20203387)
chr8 (28-68)||(24362330-24362370)
chr8 (24-70)||(29096951-29096997)
chr8 (25-66)||(3556306-3556347)
chr8 (24-73)||(10356866-10356914)
chr8 (30-67)||(14226999-14227036)
[»] chr6 (8 HSPs)
chr6 (24-76)||(10764084-10764136)
chr6 (24-75)||(24344685-24344736)
chr6 (23-65)||(4012730-4012772)
chr6 (24-57)||(585728-585761)
chr6 (26-75)||(9689858-9689907)
chr6 (38-75)||(17421949-17421986)
chr6 (22-75)||(34625734-34625787)
chr6 (23-63)||(6074525-6074565)
[»] chr1 (3 HSPs)
chr1 (22-65)||(4795552-4795595)
chr1 (24-65)||(4796431-4796472)
chr1 (22-65)||(4793869-4793912)
[»] chr2 (7 HSPs)
chr2 (25-74)||(894057-894106)
chr2 (24-76)||(17298890-17298941)
chr2 (26-76)||(31980230-31980279)
chr2 (28-76)||(1401063-1401112)
chr2 (24-73)||(31497922-31497971)
chr2 (24-68)||(9956999-9957043)
chr2 (24-76)||(21186639-21186691)
[»] chr5 (5 HSPs)
chr5 (23-75)||(9895147-9895199)
chr5 (24-73)||(4991154-4991202)
chr5 (23-76)||(15086697-15086750)
chr5 (24-76)||(16274348-16274399)
chr5 (23-63)||(28322253-28322293)
[»] chr7 (7 HSPs)
chr7 (24-76)||(44287847-44287899)
chr7 (24-69)||(23423220-23423265)
chr7 (26-66)||(22684464-22684504)
chr7 (24-76)||(24401828-24401880)
chr7 (27-75)||(28266474-28266522)
chr7 (24-56)||(38957350-38957382)
chr7 (24-80)||(46179918-46179974)
[»] chr4 (6 HSPs)
chr4 (23-74)||(50699170-50699222)
chr4 (25-75)||(843150-843200)
chr4 (28-70)||(12710008-12710050)
chr4 (31-76)||(7148467-7148512)
chr4 (28-68)||(48557632-48557672)
chr4 (24-68)||(55258425-55258469)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 274 - 624
Target Start/End: Original strand, 14783044 - 14783394
Alignment:
Q  274 taaagatgagagtacctaggggaagcacaaagaagaacaatcctcttaaaaagctcaggttttttaatggaggcaatgcaacctatcatagcagccatag 373  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14783044 taaagatgatagtaccttggggatgcacaaagaagaacaatcctcttaaaaagctcaggctttttaatggaggcaatgcaacctatcatagcagccatag 14783143  T
Q  374 agtgtccaacaaaagtgatacatttgaggtccaactcatccataagagtgattaactcatcagcataaggttcataggaattatattttgcatgattata 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14783144 agtgtccaacaaaagtgatacatttgaggtccaactcatccataagagtgattaactcatcagcataaggttcataggaattatattttgcatgattata 14783243  T
Q  474 aaggcttttatctgtaatagctccagaaaatggccaatcaaacagaactagactgtaattttcagctaaaagaggaacaattttattccatatagactgg 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14783244 aaggcttttatctgtaatagctccagaaaatggccaatcaaacagaactagactgtaattttcagctaaaagaggaacaattttattccatgtagactgg 14783343  T
Q  574 tctgttccaaacccatgacataaaactattgtttcgggtcctaagcctatg 624  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  14783344 tctgttccaaaaccatgacataaaactattgtttcgggtcctgagcctatg 14783394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 14782856 - 14783044
Alignment:
Q  26 acatgtgattacgttcaattaatttattttttcaaatttttaccggtgtcatgtcaacgtgtttgtgtcaatatcatatctgatattcgtgtttgtgttt 125  Q
    |||||||||||||||||||||||| ||||||||||||||||||| || |||     || ||||| ||||| | |||||| |||||||||||||||||||     
T  14782856 acatgtgattacgttcaattaattcattttttcaaatttttaccagtatca-----acatgtttatgtcagtgtcatatttgatattcgtgtttgtgtta 14782950  T
Q  126 gtgtttcacgtatccaaatacacaatatgagatttcaccaaataatcaagtgtttttaacaatagatttcaaatattgtgttattgttagtattttcat 224  Q
    |||||||||     ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14782951 gtgtttcac-----caaatacgcaatatgagatttcaccaaataatcaagtgtttttaacaatagaattcaaatattgtgttattgttagtattttcat 14783044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 34986743 - 34986794
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||| |||||    
T  34986743 acacatgtggttaggttcaattaattcattttttcaaatttttacccgtgtc 34986794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 9198640 - 9198682
Alignment:
Q  26 acatgtgattacgttcaattaatttattttttcaaatttttac 68  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  9198640 acatgtgattatgttcaattaattcattttttcaaatttttac 9198682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 18268013 - 18268052
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatt 63  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  18268013 acacatgtgattacgttcaattaattcattttctcaaatt 18268052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 47542586 - 47542530
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtcatgtc 80  Q
    |||||||||||||| ||||| || || ||||| ||||||| ||||| ||||||||||    
T  47542586 acacatgtgattacattcaaatagttcattttctcaaattattaccagtgtcatgtc 47542530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 18212380 - 18212328
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  18212380 acacgtgtgattacgttcaattaatttattttttcatatttttaccagtgtca 18212328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 20154083 - 20154135
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||||||||||| | || |||||||| |||||||||| |||||||||||||||    
T  20154083 acacatgtgattgcatttaattaattcattttttcaagtttttaccggtgtca 20154135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 20203387 - 20203335
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||||||||||| | || |||||||| |||||||||| |||||||||||||||    
T  20203387 acacatgtgattgcatttaattaattcattttttcaagtttttaccggtgtca 20203335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 24362370 - 24362330
Alignment:
Q  28 atgtgattacgttcaattaatttattttttcaaatttttac 68  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  24362370 atgtgattacattcaattaattcattttttcaaatttttac 24362330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 29096997 - 29096951
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccg 70  Q
    |||||||||||||| ||||||||||||||||| | ||||| ||||||    
T  29096997 acacatgtgattacattcaattaatttattttcttaaattattaccg 29096951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 3556347 - 3556306
Alignment:
Q  25 cacatgtgattacgttcaattaatttattttttcaaattttt 66  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  3556347 cacatgtgattacgttcaaataattcatttttacaaattttt 3556306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 10356914 - 10356866
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtg 73  Q
    |||||||||||||| |||||||||||||  |||||||||| |||||||||    
T  10356914 acacatgtgattacattcaattaattta-attttcaaattattaccggtg 10356866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 14227036 - 14226999
Alignment:
Q  30 gtgattacgttcaattaatttattttttcaaattttta 67  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  14227036 gtgattatgttcaattaattcattttttcaaattttta 14226999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 10764084 - 10764136
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  10764084 acacatgcgattacgttcaattaattcattttttcaaatttttaccagtgtca 10764136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 24344685 - 24344736
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    ||||||||||||| ||||||||||||  ||||||| |||||| |||||||||    
T  24344685 acacatgtgattaggttcaattaattatttttttcgaattttgaccggtgtc 24344736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 4012772 - 4012730
Alignment:
Q  23 aacacatgtgattacgttcaattaatttattttttcaaatttt 65  Q
    ||||||||||||||  ||||||||||| |||||||||||||||    
T  4012772 aacacatgtgattatattcaattaattcattttttcaaatttt 4012730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 585728 - 585761
Alignment:
Q  24 acacatgtgattacgttcaattaatttatttttt 57  Q
    |||||||||||||||||||||||||| |||||||    
T  585728 acacatgtgattacgttcaattaattcatttttt 585761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 9689858 - 9689907
Alignment:
Q  26 acatgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    ||||||||||||||| || ||||||||||||| ||||| |||||| ||||    
T  9689858 acatgtgattacgttaaaataatttattttttaaaattattaccgatgtc 9689907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 17421986 - 17421949
Alignment:
Q  38 gttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  17421986 gttcaattaattcattttttcaaattttaaccggtgtc 17421949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 34625787 - 34625734
Alignment:
Q  22 taacacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    ||||| |||||||||| ||||||||||| ||||| ||||||| ||| |||||||    
T  34625787 taacatatgtgattacattcaattaattcattttctcaaattattatcggtgtc 34625734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 6074565 - 6074525
Alignment:
Q  23 aacacatgtgattacgttcaattaatttattttttcaaatt 63  Q
    ||||||||||||||||||||| ||||| ||||| |||||||    
T  6074565 aacacatgtgattacgttcaactaattcattttctcaaatt 6074525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 4795595 - 4795552
Alignment:
Q  22 taacacatgtgattacgttcaattaatttattttttcaaatttt 65  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  4795595 taacacatgtgattatgttcaattaatttattttttcaaatttt 4795552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 4796472 - 4796431
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttt 65  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  4796472 acacatgtgattatgttcaattaatttattttttcaaatttt 4796431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 4793912 - 4793869
Alignment:
Q  22 taacacatgtgattacgttcaattaatttattttttcaaatttt 65  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||    
T  4793912 taacacatgtgattatgtttaattaattaattttttcaaatttt 4793869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 894106 - 894057
Alignment:
Q  25 cacatgtgattacgttcaattaatttattttttcaaatttttaccggtgt 74  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  894106 cacatgtgattatgttcaattaattaattttttcaaatttttaccagtgt 894057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 17298890 - 17298941
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  17298890 acacatgtgattatgttcaattaattta-tttttctaatttttaccggtgtca 17298941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 31980230 - 31980279
Alignment:
Q  26 acatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    ||||||||||| || ||||||||| ||||| ||||||||||||||||||||    
T  31980230 acatgtgattatgtccaattaattaatttt-tcaaatttttaccggtgtca 31980279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1401112 - 1401063
Alignment:
Q  28 atgtgattacgttcaattaatttattttttc-aaatttttaccggtgtca 76  Q
    ||||||||| ||| |||||||| |||||||| ||||||||||||||||||    
T  1401112 atgtgattaagtttaattaattcattttttccaaatttttaccggtgtca 1401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 31497922 - 31497971
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtg 73  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||    
T  31497922 acacatgtgattccgttcaattaattcatttttgcaaacatttaccggtg 31497971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 9956999 - 9957043
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttac 68  Q
    |||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  9956999 acacatgtcattacgttcaaataatttattttgtcaaattattac 9957043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 21186639 - 21186691
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||||||||||||||||||| ||||| | ||| ||||||  ||||||||||||    
T  21186639 acacatgtgattacgttcaaataattcactttctcaaatcattaccggtgtca 21186691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 9895199 - 9895147
Alignment:
Q  23 aacacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  9895199 aacacatgtgattacgttcaaataatttattttctcaaattattactggtgtc 9895147  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 4991154 - 4991202
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtg 73  Q
    |||||||||||||| ||||||||||| | ||||||||||||||| |||||    
T  4991154 acacatgtgattacattcaattaattca-tttttcaaatttttatcggtg 4991202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15086750 - 15086697
Alignment:
Q  23 aacacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    ||||||||||||||||||||| ||||| | ||| ||||||| ||||| ||||||    
T  15086750 aacacatgtgattacgttcaaataattcactttctcaaattattacccgtgtca 15086697  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 16274348 - 16274399
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||||||||||||| ||||||||||| | ||| |||||||||||| |||||||    
T  16274348 acacatgtgattacattcaattaattca-tttctcaaatttttactggtgtca 16274399  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 28322293 - 28322253
Alignment:
Q  23 aacacatgtgattacgttcaattaatttattttttcaaatt 63  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  28322293 aacacatgtgattacattcaattaattcattttctcaaatt 28322253  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 44287899 - 44287847
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||||||||||| | || |||||||| |||||||||| |||||||||||||||    
T  44287899 acacatgtgattgcatttaattaattcattttttcaagtttttaccggtgtca 44287847  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 23423220 - 23423265
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttacc 69  Q
    |||||||||||||| ||||||||| | |||| ||||||||||||||    
T  23423220 acacatgtgattactttcaattaaatcatttattcaaatttttacc 23423265  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 22684504 - 22684464
Alignment:
Q  26 acatgtgattacgttcaattaatttattttttcaaattttt 66  Q
    |||||||||||||||||||||| | || |||||||||||||    
T  22684504 acatgtgattacgttcaattaactcatattttcaaattttt 22684464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 24401880 - 24401828
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    |||||||||||||| ||||||||||  ||||| ||||| |||||| |||||||    
T  24401880 acacatgtgattacattcaattaatccattttctcaaaattttactggtgtca 24401828  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 28266522 - 28266474
Alignment:
Q  27 catgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    |||||| |||| | ||||||||||||||| ||||||| |||||||||||    
T  28266522 catgtgtttacatccaattaatttattttctcaaattattaccggtgtc 28266474  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 38957350 - 38957382
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttt 56  Q
    |||||||||||||| ||||||||||||||||||    
T  38957350 acacatgtgattacattcaattaatttattttt 38957382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 46179918 - 46179974
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtcatgtc 80  Q
    |||||||||||||  ||||||||||||||||| |||| || ||| | ||||||||||    
T  46179918 acacatgtgattatattcaattaatttattttctcaacttattatcagtgtcatgtc 46179974  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 50699222 - 50699170
Alignment:
Q  23 aacacatgtgattacgttcaattaatttatttttt-caaatttttaccggtgt 74  Q
    ||||||||||||||| ||||||||| | ||||||| |||||||||||||||||    
T  50699222 aacacatgtgattacattcaattaactaatttttttcaaatttttaccggtgt 50699170  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 843150 - 843200
Alignment:
Q  25 cacatgtgattacgttcaattaatttattttttcaaatttttaccggtgtc 75  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||| |||||    
T  843150 cacatgtgattacgttcaaataattcattttctcaaattattaccagtgtc 843200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 12710050 - 12710008
Alignment:
Q  28 atgtgattacgttcaattaatttattttttcaaatttttaccg 70  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||    
T  12710050 atgtgtttacgttcaattaatttattttctcaaattattaccg 12710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 7148467 - 7148512
Alignment:
Q  31 tgattacgttcaattaatttattttttcaaatttttaccggtgtca 76  Q
    ||||| |||| |||||||| |||||||||| |||||||||||||||    
T  7148467 tgattgcgttaaattaattcattttttcaattttttaccggtgtca 7148512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 48557672 - 48557632
Alignment:
Q  28 atgtgattacgttcaattaatttattttttcaaatttttac 68  Q
    ||||||||||||||| |||||| ||||| ||||||||||||    
T  48557672 atgtgattacgttcagttaattcattttctcaaatttttac 48557632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 55258469 - 55258425
Alignment:
Q  24 acacatgtgattacgttcaattaatttattttttcaaatttttac 68  Q
    |||||||||||||| || ||||||||  |||||||||||||||||    
T  55258469 acacatgtgattacatttaattaattagttttttcaaatttttac 55258425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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