View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20276_low_3 (Length: 591)
Name: NF20276_low_3
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20276_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 313 - 506
Target Start/End: Original strand, 42679306 - 42679501
Alignment:
| Q |
313 |
ctaacgaacacgattttctttaaccttaccacctacgcgttagtgatgggaaattcctaggaataatatgtccagcaacaccaataggtcttgaacacat |
412 |
Q |
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| T |
42679306 |
ctaacgaacgcgattttctttaaccttaccacctaagcattagtgatgggaaattcctaggaataatatgtccagcaacaccaataggttttgaacacat |
42679405 |
T |
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| Q |
413 |
ctttatgaatt--tatatcgggatagtaacacgcgatattttctgcttcaggaatatgtacagccaccgactatatagcgtcccttgatcaaatgt |
506 |
Q |
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| T |
42679406 |
ctttatgaatttatatatcgggatagtaacacgcgatattttctgcttcaggaatatgtacagccaccgactatatagcgtcccttgatcaaatgt |
42679501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 589
Target Start/End: Original strand, 42679519 - 42679581
Alignment:
| Q |
527 |
ctataacctttcacgcaacaacnnnnnnnnatacattctatacaattctttcttctctctcga |
589 |
Q |
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| T |
42679519 |
ctataacctttcacgcaaccacttttttttatacattctatacaattctttcttctttctcga |
42679581 |
T |
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